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opencobra / memote

memote – the genome-scale metabolic model test suite
https://memote.readthedocs.io/
Apache License 2.0
123 stars 26 forks source link

Running memote #748

Closed SoleilSu closed 9 months ago

SoleilSu commented 11 months ago

I am running memote in my conda environment, and I got an import error: ImportError: cannot import name 'open_text' from 'importlib_resources' Then I reinstalled the packages as suggested pip install 'importlib_resources <1.0'. And I got a new error.

Traceback (most recent call last):
  File "/local/workdir/ls764/metaGEM/workflow/envs/metaG/bin/memote", line 5, in <module>
    from memote.suite.cli.runner import cli
  File "/local/workdir/ls764/metaGEM/workflow/envs/metaG/lib/python3.8/site-packages/memote/suite/cli/runner.py", line 45, in <module>
    import memote.suite.cli.callbacks as callbacks
  File "/local/workdir/ls764/metaGEM/workflow/envs/metaG/lib/python3.8/site-packages/memote/suite/cli/callbacks.py", line 30, in <module>
    from memote.experimental import ExperimentConfiguration
  File "/local/workdir/ls764/metaGEM/workflow/envs/metaG/lib/python3.8/site-packages/memote/experimental/__init__.py", line 22, in <module>
    from memote.experimental.config import *
  File "/local/workdir/ls764/metaGEM/workflow/envs/metaG/lib/python3.8/site-packages/memote/experimental/config.py", line 29, in <module>
    from jsonschema import Draft4Validator
  File "/local/workdir/ls764/metaGEM/workflow/envs/metaG/lib/python3.8/site-packages/jsonschema/__init__.py", line 17, in <module>
    from jsonschema.validators import (
  File "/local/workdir/ls764/metaGEM/workflow/envs/metaG/lib/python3.8/site-packages/jsonschema/validators.py", line 19, in <module>
    from jsonschema_specifications import REGISTRY as SPECIFICATIONS
  File "/local/workdir/ls764/metaGEM/workflow/envs/metaG/lib/python3.8/site-packages/jsonschema_specifications/__init__.py", line 7, in <module>
    from jsonschema_specifications._core import _schemas
  File "/local/workdir/ls764/metaGEM/workflow/envs/metaG/lib/python3.8/site-packages/jsonschema_specifications/_core.py", line 10, in <module>
    from importlib_resources import files  # type: ignore
ImportError: cannot import name 'files' from 'importlib_resources' (/local/workdir/ls764/metaGEM/workflow/envs/metaG/lib/python3.8/site-packages/importlib_resources/__init__.py)
Midnighter commented 9 months ago

Let's keep this open so I have a reference tomorrow when I want to fix this.