opencv / opencv

Open Source Computer Vision Library
https://opencv.org
Apache License 2.0
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(libopencv_core undefined reference to) OpenCV build (with Anaconda 3 and CUDA) from source (4.0.0-rc) is failing #13186

Closed khurramHazen closed 5 years ago

khurramHazen commented 5 years ago
[ 16%] Linking CXX executable ../../bin/example_phase_unwrapping_unwrap
cd /home/khurram/LIBRARIES/OPENCV34/opencv/build/modules/phase_unwrapping && /home/khurram/miniconda3/bin/cmake -E cmake_link_script CMakeFiles/example_phase_unwrapping_unwrap.dir/link.txt --verbose=1
/usr/bin/c++  -g -H   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -O3 -DNDEBUG  -DNDEBUG    -Wl,--gc-sections   CMakeFiles/example_phase_unwrapping_unwrap.dir/samples/unwrap.cpp.o  -o ../../bin/example_phase_unwrapping_unwrap  -L/usr/local/cuda-9.0/lib64 -Wl,-rpath,/usr/local/cuda-9.0/lib64:/home/khurram/LIBRARIES/OPENCV34/opencv/build/lib ../../lib/libopencv_phase_unwrapping.so.4.0.0 ../../lib/libopencv_highgui.so.4.0.0 ../../lib/libopencv_videoio.so.4.0.0 ../../lib/libopencv_imgcodecs.so.4.0.0 ../../lib/libopencv_imgproc.so.4.0.0 ../../lib/libopencv_core.so.4.0.0 ../../lib/libopencv_cudev.so.4.0.0 
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::allocate(unsigned long)'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::_OutputArray::create(cv::Size_<int>, int, int, bool, int) const'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::error(int, cv::String const&, char const*, char const*, int)'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::deallocate()'
collect2: error: ld returned 1 exit status
modules/phase_unwrapping/CMakeFiles/example_phase_unwrapping_unwrap.dir/build.make:90: recipe for target 'bin/example_phase_unwrapping_unwrap' failed
make[2]: *** [bin/example_phase_unwrapping_unwrap] Error 1
make[2]: Leaving directory '/home/khurram/LIBRARIES/OPENCV34/opencv/build'
CMakeFiles/Makefile2:3110: recipe for target 'modules/phase_unwrapping/CMakeFiles/example_phase_unwrapping_unwrap.dir/all' failed
make[1]: *** [modules/phase_unwrapping/CMakeFiles/example_phase_unwrapping_unwrap.dir/all] Error 2
make[1]: Leaving directory '/home/khurram/LIBRARIES/OPENCV34/opencv/build'
Makefile:162: recipe for target 'all' failed
make: *** [all] Error 2
System information (version)
$ nvcc -V
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2017 NVIDIA Corporation
Built on Fri_Sep__1_21:08:03_CDT_2017
Cuda compilation tools, release 9.0, V9.0.176

CMAKE STDOUT

/home/khurram/miniconda3/bin/cmake -H/home/khurram/LIBRARIES/OPENCV34/opencv -B/home/khurram/LIBRARIES/OPENCV34/opencv/build --check-build-system CMakeFiles/Makefile.cmake 0
Re-run cmake file: Makefile older than: modules/cudaarithm/CMakeFiles/cuda_compile_1.dir/src/cuda/cuda_compile_1_generated_threshold.cu.o.depend
-- Looking for ccache - not found
-- Found ZLIB: /home/khurram/miniconda3/lib/libz.so.1.2.11 (found suitable version "1.2.11", minimum required is "1.2.3") 
-- Found ZLIB: /home/khurram/miniconda3/lib/libz.so.1.2.11 (found version "1.2.11") 
-- Found OpenEXR: /usr/lib/x86_64-linux-gnu/libIlmImf.so
-- Checking for module 'gtk+-3.0'
--   No package 'gtk+-3.0' found
-- Checking for module 'gstreamer-base-1.0'
--   No package 'gstreamer-base-1.0' found
-- Checking for module 'gstreamer-video-1.0'
--   No package 'gstreamer-video-1.0' found
-- Checking for module 'gstreamer-app-1.0'
--   No package 'gstreamer-app-1.0' found
-- Checking for module 'gstreamer-riff-1.0'
--   No package 'gstreamer-riff-1.0' found
-- Checking for module 'gstreamer-pbutils-1.0'
--   No package 'gstreamer-pbutils-1.0' found
-- Looking for linux/videodev2.h
-- Looking for linux/videodev2.h - found
-- Looking for sys/videoio.h
-- Looking for sys/videoio.h - not found
-- Checking for module 'libavresample'
--   No package 'libavresample' found
-- found Intel IPP (ICV version): 2019.0.0 [2019.0.0 Gold]
-- at: /home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/icv
-- found Intel IPP Integration Wrappers sources: 2019.0.0
-- at: /home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/iw
-- CUDA detected: 9.0
-- CUDA NVCC target flags: -gencode;arch=compute_30,code=sm_30;-gencode;arch=compute_35,code=sm_35;-gencode;arch=compute_37,code=sm_37;-gencode;arch=compute_50,code=sm_50;-gencode;arch=compute_52,code=sm_52;-gencode;arch=compute_60,code=sm_60;-gencode;arch=compute_61,code=sm_61;-gencode;arch=compute_70,code=sm_70;-D_FORCE_INLINES
-- LAPACK(MKL): LAPACK_LIBRARIES: /home/khurram/miniconda3/lib/libmkl_intel_lp64.so;/home/khurram/miniconda3/lib/libmkl_sequential.so;/home/khurram/miniconda3/lib/libmkl_core.so;/home/khurram/miniconda3/lib/libmkl_intel_lp64.so;/home/khurram/miniconda3/lib/libmkl_sequential.so;/home/khurram/miniconda3/lib/libmkl_core.so;/home/khurram/miniconda3/lib/libmkl_intel_lp64.so;/home/khurram/miniconda3/lib/libmkl_sequential.so;/home/khurram/miniconda3/lib/libmkl_core.so;-lpthread;-lm;-ldl
-- LAPACK(MKL): Support is enabled.
-- Could NOT find JNI (missing: JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 JAVA_AWT_INCLUDE_PATH) 
-- Could NOT find Pylint (missing: PYLINT_EXECUTABLE) 
-- Could NOT find Flake8 (missing: FLAKE8_EXECUTABLE) 
-- VTK is not found. Please set -DVTK_DIR in CMake to VTK build directory, or to VTK install subdirectory with VTKConfig.cmake file
-- Caffe:   NO
CMake Warning at /home/khurram/miniconda3/share/cmake-3.12/Modules/FindProtobuf.cmake:455 (message):
  Protobuf compiler version 3.6.0 doesn't match library version 3.6.1
Call Stack (most recent call first):
  /home/khurram/LIBRARIES/OPENCV34/opencv_contrib/modules/cnn_3dobj/CMakeLists.txt:14 (find_package)

-- Protobuf:   YES
-- Glog:   YES
-- freetype2:   YES
-- harfbuzz:    YES
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Module opencv_ovis disabled because OGRE3D was not found
-- No preference for use of exported gflags CMake configuration set, and no hints for include/library directories provided. Defaulting to preferring an installed/exported gflags CMake configuration if available.
-- Failed to find installed gflags CMake configuration, searching for gflags build directories exported with CMake.
-- Failed to find gflags - Failed to find an installed/exported CMake configuration for gflags, will perform search for installed gflags components.
-- Checking SFM deps... TRUE
-- CERES support is disabled. Ceres Solver for reconstruction API is required.
-- Module opencv_dnn_objdetect disabled because opencv_dnn dependency can't be resolved!
-- Module opencv_text disabled because opencv_dnn dependency can't be resolved!
-- freetype2:   YES
-- harfbuzz:    YES
-- No preference for use of exported gflags CMake configuration set, and no hints for include/library directories provided. Defaulting to preferring an installed/exported gflags CMake configuration if available.
-- Failed to find installed gflags CMake configuration, searching for gflags build directories exported with CMake.
-- Failed to find gflags - Failed to find an installed/exported CMake configuration for gflags, will perform search for installed gflags components.
-- Checking SFM deps... TRUE
-- CERES support is disabled. Ceres Solver for reconstruction API is required.
-- OpenCL samples are skipped: OpenCL SDK is required
-- 
-- General configuration for OpenCV 4.0.0-rc =====================================
--   Version control:               4.0.0-rc
-- 
--   Extra modules:
--     Location (extra):            /home/khurram/LIBRARIES/OPENCV34/opencv_contrib/modules
--     Version control (extra):     4.0.0-rc
-- 
--   Platform:
--     Timestamp:                   2018-11-16T15:59:03Z
--     Host:                        Linux 4.15.0-32-generic x86_64
--     CMake:                       3.12.2
--     CMake generator:             Unix Makefiles
--     CMake build tool:            /usr/bin/make
--     Configuration:               RELEASE
-- 
--   CPU/HW features:
--     Baseline:                    SSE SSE2 SSE3
--       requested:                 SSE3
--     Dispatched code generation:  SSE4_1 SSE4_2 FP16 AVX AVX2 AVX512_SKX
--       requested:                 SSE4_1 SSE4_2 AVX FP16 AVX2 AVX512_SKX
--       SSE4_1 (4 files):          + SSSE3 SSE4_1
--       SSE4_2 (1 files):          + SSSE3 SSE4_1 POPCNT SSE4_2
--       FP16 (0 files):            + SSSE3 SSE4_1 POPCNT SSE4_2 FP16 AVX
--       AVX (3 files):             + SSSE3 SSE4_1 POPCNT SSE4_2 AVX
--       AVX2 (9 files):            + SSSE3 SSE4_1 POPCNT SSE4_2 FP16 FMA3 AVX AVX2
--       AVX512_SKX (0 files):      + SSSE3 SSE4_1 POPCNT SSE4_2 FP16 FMA3 AVX AVX2 AVX_512F AVX512_SKX
-- 
--   C/C++:
--     Built as dynamic libs?:      YES
--     C++ Compiler:                /usr/bin/c++  (ver 5.4.0)
--     C++ flags (Release):         -g -H   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -O3 -DNDEBUG  -DNDEBUG
--     C++ flags (Debug):           -g -H   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -g  -O0 -DDEBUG -D_DEBUG
--     C Compiler:                  /usr/bin/cc
--     C flags (Release):           -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wuninitialized -Winit-self -Wno-narrowing -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -O3 -DNDEBUG  -DNDEBUG
--     C flags (Debug):             -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wuninitialized -Winit-self -Wno-narrowing -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -g  -O0 -DDEBUG -D_DEBUG
--     Linker flags (Release):      
--     Linker flags (Debug):        
--     ccache:                      NO
--     Precompiled headers:         YES
--     Extra dependencies:          m pthread cudart_static -lpthread dl rt nppc nppial nppicc nppicom nppidei nppif nppig nppim nppist nppisu nppitc npps cublas cufft -L/usr/local/cuda-9.0/lib64 -L/usr/lib/x86_64-linux-gnu
--     3rdparty dependencies:
-- 
--   OpenCV modules:
--     To be built:                 aruco bgsegm bioinspired calib3d ccalib core cudaarithm cudabgsegm cudacodec cudafeatures2d cudafilters cudaimgproc cudalegacy cudaobjdetect cudaoptflow cudastereo cudawarping cudev datasets dpm face features2d flann freetype fuzzy gapi hfs highgui img_hash imgcodecs imgproc java_bindings_generator line_descriptor ml objdetect optflow phase_unwrapping photo plot python3 python_bindings_generator reg rgbd saliency sfm shape stereo stitching structured_light superres surface_matching tracking video videoio videostab xfeatures2d ximgproc xobjdetect xphoto
--     Disabled:                    hdf python2 world
--     Disabled by dependency:      dnn_objdetect text
--     Unavailable:                 cnn_3dobj cvv dnn java js matlab ovis ts viz
--     Applications:                examples apps
--     Documentation:               NO
--     Non-free algorithms:         YES
-- 
--   GUI: 
--     GTK+:                        YES (ver 2.24.30)
--       GThread :                  YES (ver 2.48.2)
--       GtkGlExt:                  NO
--     VTK support:                 NO
-- 
--   Media I/O: 
--     ZLib:                        /home/khurram/miniconda3/lib/libz.so.1.2.11 (ver 1.2.11)
--     JPEG:                        /usr/lib/x86_64-linux-gnu/libjpeg.so (ver 80)
--     WEBP:                        /usr/lib/x86_64-linux-gnu/libwebp.so (ver encoder: 0x0202)
--     PNG:                         /usr/lib/x86_64-linux-gnu/libpng.so (ver 1.2.54)
--     TIFF:                        /home/khurram/miniconda3/lib/libtiff.so (ver 42 / 4.0.9)
--     JPEG 2000:                   /usr/lib/x86_64-linux-gnu/libjasper.so (ver 1.900.1)
--     OpenEXR:                     /usr/lib/x86_64-linux-gnu/libImath.so /usr/lib/x86_64-linux-gnu/libIlmImf.so /usr/lib/x86_64-linux-gnu/libIex.so /usr/lib/x86_64-linux-gnu/libHalf.so /usr/lib/x86_64-linux-gnu/libIlmThread.so (ver 2.2.0)
--     HDR:                         YES
--     SUNRASTER:                   YES
--     PXM:                         YES
--     PFM:                         YES
-- 
--   Video I/O:
--     DC1394:                      YES (ver 2.2.4)
--     FFMPEG:                      YES
--       avcodec:                   YES (ver 58.19.100)
--       avformat:                  YES (ver 58.13.100)
--       avutil:                    YES (ver 56.15.100)
--       swscale:                   YES (ver 5.2.100)
--       avresample:                NO
--     GStreamer:                   
--       base:                      YES (ver 0.10.36)
--       video:                     YES (ver 0.10.36)
--       app:                       YES (ver 0.10.36)
--       riff:                      YES (ver 0.10.36)
--       pbutils:                   YES (ver 0.10.36)
--     v4l/v4l2:                    linux/videodev2.h
-- 
--   Parallel framework:            pthreads
-- 
--   Trace:                         YES (with Intel ITT)
-- 
--   Other third-party libraries:
--     Intel IPP:                   2019.0.0 Gold [2019.0.0]
--            at:                   /home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/icv
--     Intel IPP IW:                sources (2019.0.0)
--               at:                /home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/iw
--     Lapack:                      YES (/home/khurram/miniconda3/lib/libmkl_intel_lp64.so /home/khurram/miniconda3/lib/libmkl_sequential.so /home/khurram/miniconda3/lib/libmkl_core.so /home/khurram/miniconda3/lib/libmkl_intel_lp64.so /home/khurram/miniconda3/lib/libmkl_sequential.so /home/khurram/miniconda3/lib/libmkl_core.so /home/khurram/miniconda3/lib/libmkl_intel_lp64.so /home/khurram/miniconda3/lib/libmkl_sequential.so /home/khurram/miniconda3/lib/libmkl_core.so -lpthread -lm -ldl)
--     Eigen:                       YES (ver 3.3.90)
--     Custom HAL:                  NO
-- 
--   NVIDIA CUDA:                   YES (ver 9.0, CUFFT CUBLAS NVCUVID)
--     NVIDIA GPU arch:             30 35 37 50 52 60 61 70
--     NVIDIA PTX archs:
-- 
--   OpenCL:                        YES (no extra features)
--     Include path:                /home/khurram/LIBRARIES/OPENCV34/opencv/3rdparty/include/opencl/1.2
--     Link libraries:              Dynamic load
-- 
--   Python 3:
--     Interpreter:                 /home/khurram/miniconda3/bin/python3.5m (ver 3.5.6)
--     Libraries:                   /home/khurram/miniconda3/lib/libpython3.5m.so (ver 3.5.6)
--     numpy:                       /home/khurram/miniconda3/lib/python3.5/site-packages/numpy/core/include (ver 1.15.2)
--     packages path:               /home/khurram/miniconda3/lib/python3.5/site-packages
-- 
--   Python (for build):            /usr/bin/python2.7
-- 
--   Java:                          
--     ant:                         NO
--     JNI:                         NO
--     Java wrappers:               NO
--     Java tests:                  NO
-- 
--   Install to:                    /home/khurram/miniconda3
-- -----------------------------------------------------------------
-- 
-- Configuring done
-- Generating done
-- Build files have been written to: /home/khurram/LIBRARIES/OPENCV34/opencv/build
Detailed description
System information (version)
Detailed description
Steps to reproduce
khurramHazen commented 5 years ago

same error occurred at 99% with a slightly different cmake config

$ make -j1
...
Scanning dependencies of target gen_opencv_python_source
[ 99%] Generate files for Python bindings and documentation
Note: Class Feature2D has more than 1 base class (not supported by Python C extensions)
      Bases:  cv::Algorithm, cv::class, cv::Feature2D, cv::Algorithm
      Only the first base class will be used
[ 99%] Built target gen_opencv_python_source
Scanning dependencies of target opencv_python3
[ 99%] Building CXX object modules/python3/CMakeFiles/opencv_python3.dir/__/src2/cv2.cpp.o
[ 99%] Linking CXX shared module ../../lib/python3/cv2.cpython-35m-x86_64-linux-gnu.so
[ 99%] Built target opencv_python3
Scanning dependencies of target opencv_annotation
[ 99%] Building CXX object apps/annotation/CMakeFiles/opencv_annotation.dir/opencv_annotation.cpp.o
[ 99%] Linking CXX executable ../../bin/opencv_annotation
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::allocate(unsigned long)'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::_OutputArray::create(cv::Size_<int>, int, int, bool, int) const'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::error(int, cv::String const&, char const*, char const*, int)'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::deallocate()'
collect2: error: ld returned 1 exit status
apps/annotation/CMakeFiles/opencv_annotation.dir/build.make:93: recipe for target 'bin/opencv_annotation' failed
make[2]: *** [bin/opencv_annotation] Error 1
CMakeFiles/Makefile2:10017: recipe for target 'apps/annotation/CMakeFiles/opencv_annotation.dir/all' failed
make[1]: *** [apps/annotation/CMakeFiles/opencv_annotation.dir/all] Error 2
Makefile:162: recipe for target 'all' failed
make: *** [all] Error 2

CMAKE Config

$ cmake \
> -D CMAKE_INSTALL_PREFIX=/home/khurram/miniconda3 \
> -D CMAKE_BUILD_TYPE=Release \
> -D CMAE_C_FLAGS="--Wno-unused" \
> -D CMAKE_CXX_FLAGS="-g -Wno-unused" \
> -D WITH_CUDA=ON \
> -D WITH_HALIDE=ON \
> -D ENABLE_FAST_MATH=ON \
> -D OPENCV_PYTHON3_VERSION=REQUIRED \
> -D PYTHON3_EXECUTABLE=/home/khurram/miniconda3/bin/python3.5m \
> -D PYTHON3_INCLUDE_DIR=/home/khurram/miniconda3/include/python3.5m \
> -D PYTHON3_LIBRARY=/home/khurram/miniconda3/lib/libpython3.5m.so \
> -D PYTHON3_NUMPY_INCLUDE_DIRS=/home/khurram/miniconda3/lib/python3.5/site-packages/numpy/core/include \
> -D PYTHON3_PACKAGES_PATH=/home/khurram/miniconda3/lib/python3.5/site-packages \
> -D OPENCV_ENABLE_NONFREE=ON \
> -D OPENCV_EXTRA_MODULES_PATH=/home/khurram/LIBRARIES/OPENCV400rc/opencv_contrib/modules \
> -D OPENCV_FORCE_PYTHON_LIBS=ON \
> -D BUILD_TESTS=OFF \
> -D BUILD_PERF_TESTS=OFF \
> -D BUILD_PROTOBUF=OFF \
> -D PROTOBUF_UPDATE_FILES=ON \
> -D PROTOBUF_INCLUDE_DIR=/home/khurram/miniconda3/include \
> -D PROTOBUF_LIBRARY=/home/khurram/miniconda3/lib/libprotobuf.so \
> -D PROTOBUF_LIBRARY_DEBUG=/home/khurram/miniconda3/lib/libprotobuf.so \
> -D PROTOBUF_LITE_LIBRARY=/home/khurram/miniconda3/lib/libprotobuf-lite.so \
> -D PROTOBUF_LITE_LIBRARY_DEBUG=/home/khurram/miniconda3/lib/libprotobuf-lite.so \
> -D PROTOBUF_PROTOC_EXECUTABLE=/home/khurram/miniconda3/bin/protoc \
> -D PROTOBUF_PROTOC_LIBRARY=/home/khurram/miniconda3/lib/libprotoc.so \
> -D PROTOBUF_PROTOC_LIBRARY_DEBUG=/home/khurram/miniconda3/lib/libprotoc.so \
> -D ZLIB_INCLUDE_DIR=/home/khurram/miniconda3/include \
> -D ZLIB_LIBRARY_RELEASE=/home/khurram/miniconda3/lib/libz.so.1.2.11 \
> -D TIFF_INCLUDE_DIR=/home/khurram/miniconda3/include \
> -D TIFF_LIBRARY_RELEASE=/home/khurram/miniconda3/lib/libtiff.so \
> -D PNG_PNG_INCLUDE_DIR=/home/khurram/miniconda3/include \
> -D PNG_LIBRARY_RELEASE=/home/khurram/miniconda3/lib/libpng.so \
> -D JPEG_INCLUDE_DIR=/home/khurram/miniconda3/include \
> -D JEPG_LIBRARY=/home/khurram/miniconda3/lib/libjpeg.so \
> -D INSTALL_CREATE_DISTRIB=ON \
> -D HALIDE_ROOT_DIR=/home/khurram/miniconda3/lib \
> -D Halide_DIR=/home/khurram/miniconda3/lib \
> -D HALIDE_INCLUDE_DIR=/home/khurram/miniconda3/include/Halide \
> -D HALIDE_LIBRARY=/home/khurram/miniconda3/lib/libHalide.so \
> -D BUILD_opencv_cudalegacy=OFF \
> -D BUILD_opencv_cudaobjdetect=OFF \
> -D BUILD_opencv_dnn_objdetect=OFF \
> -D BUILD_opencv_objdetect=ON \
> -D BUILD_opencv_xobjdetect=OFF \
> -D BUILD_opencv_world=OFF \
> -D BUILD_opencv_annotation=OFF \
> -D CUDA_FAST_MATH=ON \
> -D CUDA_NVCC_FLAGS='--expt-relaxed-constexpr' \
> -D CUDA_ARCH_BIN=5.2 \
> -D BUILD_opencv_python2=OFF \
> -D BUILD_opencv_python3=ON \
> -D HDF5_CXX_COMPILER_EXECUTABLE=/home/khurram/miniconda3/bin/h5c++ \
> -D HDF5_C_COMPILER_EXECUTABLE=/home/khurram/miniconda3/bin/h5cc \
> -D HDF5_C_INCLUDE_DIR=/home/khurram/miniconda3/include \
> -D HDF5_DIFF_EXECUTABLE=/home/khurram/miniconda3/bin/h5diff \
> -D HDF5_Fortran_COMPILER_EXECUTABLE=/home/khurram/miniconda3/bin/h5fc \
> -D HDF5_hdf5_LIBRARY_RELEASE=/home/khurram/miniconda3/lib/libhdf5.so \
> -D HDF5_z_LIBRARY_RELEASE=/home/khurram/miniconda3/lib/libz.so \
> -D WITH_OPENGL=ON \
> ..
-- The CXX compiler identification is GNU 5.4.0
-- The C compiler identification is GNU 5.4.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Found PythonInterp: /usr/bin/python2.7 (found suitable version "2.7.12", minimum required is "2.7") 
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found suitable exact version "2.7.12") 
CMake Warning (dev) at cmake/OpenCVUtils.cmake:102 (find_package):
  Ignoring EXACT since no version is requested.
Call Stack (most recent call first):
  cmake/OpenCVDetectPython.cmake:58 (find_host_package)
  cmake/OpenCVDetectPython.cmake:284 (find_python)
  CMakeLists.txt:552 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /home/khurram/miniconda3/bin/python3.5m (found version "3.5.6") 
-- Found PythonLibs: /home/khurram/miniconda3/lib/libpython3.5m.so (found suitable exact version "3.5.6") 
-- Looking for ccache - not found
-- Performing Test HAVE_CXX_FSIGNED_CHAR
-- Performing Test HAVE_CXX_FSIGNED_CHAR - Success
-- Performing Test HAVE_C_FSIGNED_CHAR
-- Performing Test HAVE_C_FSIGNED_CHAR - Success
-- Performing Test HAVE_CXX_W
-- Performing Test HAVE_CXX_W - Success
-- Performing Test HAVE_C_W
-- Performing Test HAVE_C_W - Success
-- Performing Test HAVE_CXX_WALL
-- Performing Test HAVE_CXX_WALL - Success
-- Performing Test HAVE_C_WALL
-- Performing Test HAVE_C_WALL - Success
-- Performing Test HAVE_CXX_WERROR_RETURN_TYPE
-- Performing Test HAVE_CXX_WERROR_RETURN_TYPE - Success
-- Performing Test HAVE_C_WERROR_RETURN_TYPE
-- Performing Test HAVE_C_WERROR_RETURN_TYPE - Success
-- Performing Test HAVE_CXX_WERROR_NON_VIRTUAL_DTOR
-- Performing Test HAVE_CXX_WERROR_NON_VIRTUAL_DTOR - Success
-- Performing Test HAVE_C_WERROR_NON_VIRTUAL_DTOR
-- Performing Test HAVE_C_WERROR_NON_VIRTUAL_DTOR - Success
-- Performing Test HAVE_CXX_WERROR_ADDRESS
-- Performing Test HAVE_CXX_WERROR_ADDRESS - Success
-- Performing Test HAVE_C_WERROR_ADDRESS
-- Performing Test HAVE_C_WERROR_ADDRESS - Success
-- Performing Test HAVE_CXX_WERROR_SEQUENCE_POINT
-- Performing Test HAVE_CXX_WERROR_SEQUENCE_POINT - Success
-- Performing Test HAVE_C_WERROR_SEQUENCE_POINT
-- Performing Test HAVE_C_WERROR_SEQUENCE_POINT - Success
-- Performing Test HAVE_CXX_WFORMAT
-- Performing Test HAVE_CXX_WFORMAT - Success
-- Performing Test HAVE_C_WFORMAT
-- Performing Test HAVE_C_WFORMAT - Success
-- Performing Test HAVE_CXX_WERROR_FORMAT_SECURITY
-- Performing Test HAVE_CXX_WERROR_FORMAT_SECURITY - Success
-- Performing Test HAVE_C_WERROR_FORMAT_SECURITY
-- Performing Test HAVE_C_WERROR_FORMAT_SECURITY - Success
-- Performing Test HAVE_CXX_WMISSING_DECLARATIONS
-- Performing Test HAVE_CXX_WMISSING_DECLARATIONS - Success
-- Performing Test HAVE_C_WMISSING_DECLARATIONS
-- Performing Test HAVE_C_WMISSING_DECLARATIONS - Success
-- Performing Test HAVE_CXX_WMISSING_PROTOTYPES
-- Performing Test HAVE_CXX_WMISSING_PROTOTYPES - Failed
-- Performing Test HAVE_C_WMISSING_PROTOTYPES
-- Performing Test HAVE_C_WMISSING_PROTOTYPES - Success
-- Performing Test HAVE_CXX_WSTRICT_PROTOTYPES
-- Performing Test HAVE_CXX_WSTRICT_PROTOTYPES - Failed
-- Performing Test HAVE_C_WSTRICT_PROTOTYPES
-- Performing Test HAVE_C_WSTRICT_PROTOTYPES - Success
-- Performing Test HAVE_CXX_WUNDEF
-- Performing Test HAVE_CXX_WUNDEF - Success
-- Performing Test HAVE_C_WUNDEF
-- Performing Test HAVE_C_WUNDEF - Success
-- Performing Test HAVE_CXX_WINIT_SELF
-- Performing Test HAVE_CXX_WINIT_SELF - Success
-- Performing Test HAVE_C_WINIT_SELF
-- Performing Test HAVE_C_WINIT_SELF - Success
-- Performing Test HAVE_CXX_WPOINTER_ARITH
-- Performing Test HAVE_CXX_WPOINTER_ARITH - Success
-- Performing Test HAVE_C_WPOINTER_ARITH
-- Performing Test HAVE_C_WPOINTER_ARITH - Success
-- Performing Test HAVE_CXX_WSHADOW
-- Performing Test HAVE_CXX_WSHADOW - Success
-- Performing Test HAVE_C_WSHADOW
-- Performing Test HAVE_C_WSHADOW - Success
-- Performing Test HAVE_CXX_WSIGN_PROMO
-- Performing Test HAVE_CXX_WSIGN_PROMO - Success
-- Performing Test HAVE_C_WSIGN_PROMO
-- Performing Test HAVE_C_WSIGN_PROMO - Failed
-- Performing Test HAVE_CXX_WUNINITIALIZED
-- Performing Test HAVE_CXX_WUNINITIALIZED - Success
-- Performing Test HAVE_C_WUNINITIALIZED
-- Performing Test HAVE_C_WUNINITIALIZED - Success
-- Performing Test HAVE_CXX_WNO_NARROWING
-- Performing Test HAVE_CXX_WNO_NARROWING - Success
-- Performing Test HAVE_C_WNO_NARROWING
-- Performing Test HAVE_C_WNO_NARROWING - Success
-- Performing Test HAVE_CXX_WNO_DELETE_NON_VIRTUAL_DTOR
-- Performing Test HAVE_CXX_WNO_DELETE_NON_VIRTUAL_DTOR - Success
-- Performing Test HAVE_C_WNO_DELETE_NON_VIRTUAL_DTOR
-- Performing Test HAVE_C_WNO_DELETE_NON_VIRTUAL_DTOR - Failed
-- Performing Test HAVE_CXX_WNO_UNNAMED_TYPE_TEMPLATE_ARGS
-- Performing Test HAVE_CXX_WNO_UNNAMED_TYPE_TEMPLATE_ARGS - Failed
-- Performing Test HAVE_C_WNO_UNNAMED_TYPE_TEMPLATE_ARGS
-- Performing Test HAVE_C_WNO_UNNAMED_TYPE_TEMPLATE_ARGS - Failed
-- Performing Test HAVE_CXX_WNO_COMMENT
-- Performing Test HAVE_CXX_WNO_COMMENT - Success
-- Performing Test HAVE_C_WNO_COMMENT
-- Performing Test HAVE_C_WNO_COMMENT - Success
-- Performing Test HAVE_CXX_FDIAGNOSTICS_SHOW_OPTION
-- Performing Test HAVE_CXX_FDIAGNOSTICS_SHOW_OPTION - Success
-- Performing Test HAVE_C_FDIAGNOSTICS_SHOW_OPTION
-- Performing Test HAVE_C_FDIAGNOSTICS_SHOW_OPTION - Success
-- Performing Test HAVE_CXX_WNO_LONG_LONG
-- Performing Test HAVE_CXX_WNO_LONG_LONG - Success
-- Performing Test HAVE_C_WNO_LONG_LONG
-- Performing Test HAVE_C_WNO_LONG_LONG - Success
-- Performing Test HAVE_CXX_PTHREAD
-- Performing Test HAVE_CXX_PTHREAD - Success
-- Performing Test HAVE_C_PTHREAD
-- Performing Test HAVE_C_PTHREAD - Success
-- Performing Test HAVE_CXX_FOMIT_FRAME_POINTER
-- Performing Test HAVE_CXX_FOMIT_FRAME_POINTER - Success
-- Performing Test HAVE_C_FOMIT_FRAME_POINTER
-- Performing Test HAVE_C_FOMIT_FRAME_POINTER - Success
-- Performing Test HAVE_CXX_FFAST_MATH
-- Performing Test HAVE_CXX_FFAST_MATH - Success
-- Performing Test HAVE_C_FFAST_MATH
-- Performing Test HAVE_C_FFAST_MATH - Success
-- Performing Test HAVE_CXX_FFUNCTION_SECTIONS
-- Performing Test HAVE_CXX_FFUNCTION_SECTIONS - Success
-- Performing Test HAVE_C_FFUNCTION_SECTIONS
-- Performing Test HAVE_C_FFUNCTION_SECTIONS - Success
-- Performing Test HAVE_CXX_FDATA_SECTIONS
-- Performing Test HAVE_CXX_FDATA_SECTIONS - Success
-- Performing Test HAVE_C_FDATA_SECTIONS
-- Performing Test HAVE_C_FDATA_SECTIONS - Success
-- Performing Test HAVE_CXX_MSSE (check file: cmake/checks/cpu_sse.cpp)
-- Performing Test HAVE_CXX_MSSE - Success
-- Performing Test HAVE_CXX_MSSE2 (check file: cmake/checks/cpu_sse2.cpp)
-- Performing Test HAVE_CXX_MSSE2 - Success
-- Performing Test HAVE_CXX_MSSE3 (check file: cmake/checks/cpu_sse3.cpp)
-- Performing Test HAVE_CXX_MSSE3 - Success
-- Performing Test HAVE_CXX_MSSSE3 (check file: cmake/checks/cpu_ssse3.cpp)
-- Performing Test HAVE_CXX_MSSSE3 - Success
-- Performing Test HAVE_CXX_MSSE4_1 (check file: cmake/checks/cpu_sse41.cpp)
-- Performing Test HAVE_CXX_MSSE4_1 - Success
-- Performing Test HAVE_CXX_MPOPCNT (check file: cmake/checks/cpu_popcnt.cpp)
-- Performing Test HAVE_CXX_MPOPCNT - Success
-- Performing Test HAVE_CXX_MSSE4_2 (check file: cmake/checks/cpu_sse42.cpp)
-- Performing Test HAVE_CXX_MSSE4_2 - Success
-- Performing Test HAVE_CXX_MF16C (check file: cmake/checks/cpu_fp16.cpp)
-- Performing Test HAVE_CXX_MF16C - Success
-- Performing Test HAVE_CXX_MFMA
-- Performing Test HAVE_CXX_MFMA - Success
-- Performing Test HAVE_CXX_MAVX (check file: cmake/checks/cpu_avx.cpp)
-- Performing Test HAVE_CXX_MAVX - Success
-- Performing Test HAVE_CXX_MAVX2 (check file: cmake/checks/cpu_avx2.cpp)
-- Performing Test HAVE_CXX_MAVX2 - Success
-- Performing Test HAVE_CXX_MAVX512F (check file: cmake/checks/cpu_avx512.cpp)
-- Performing Test HAVE_CXX_MAVX512F - Success
-- Performing Test HAVE_CXX_MAVX512F_MAVX512CD_MAVX512VL_MAVX512BW_MAVX512DQ (check file: cmake/checks/cpu_avx512skx.cpp)
-- Performing Test HAVE_CXX_MAVX512F_MAVX512CD_MAVX512VL_MAVX512BW_MAVX512DQ - Success
-- Performing Test HAVE_CPU_BASELINE_FLAGS
-- Performing Test HAVE_CPU_BASELINE_FLAGS - Success
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_SSE4_1
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_SSE4_1 - Success
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_SSE4_2
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_SSE4_2 - Success
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_FP16
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_FP16 - Success
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_AVX
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_AVX - Success
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_AVX2
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_AVX2 - Success
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_AVX512_SKX
-- Performing Test HAVE_CPU_DISPATCH_FLAGS_AVX512_SKX - Success
-- Performing Test HAVE_CXX_FVISIBILITY_HIDDEN
-- Performing Test HAVE_CXX_FVISIBILITY_HIDDEN - Success
-- Performing Test HAVE_C_FVISIBILITY_HIDDEN
-- Performing Test HAVE_C_FVISIBILITY_HIDDEN - Success
-- Performing Test HAVE_CXX_FVISIBILITY_INLINES_HIDDEN
-- Performing Test HAVE_CXX_FVISIBILITY_INLINES_HIDDEN - Success
-- Performing Test HAVE_C_FVISIBILITY_INLINES_HIDDEN
-- Performing Test HAVE_C_FVISIBILITY_INLINES_HIDDEN - Failed
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for malloc.h
-- Looking for malloc.h - found
-- Looking for memalign
-- Looking for memalign - found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Found ZLIB: /home/khurram/miniconda3/lib/libz.so.1.2.11 (found suitable version "1.2.11", minimum required is "1.2.3") 
-- Found JPEG: /usr/lib/x86_64-linux-gnu/libjpeg.so (found version "90") 
-- Found TIFF: /home/khurram/miniconda3/lib/libtiff.so (found version "4.0.9") 
-- Found WebP: /usr/lib/x86_64-linux-gnu/libwebp.so  
-- Found Jasper: /usr/lib/x86_64-linux-gnu/libjasper.so (found version "1.900.1") 
-- Found ZLIB: /home/khurram/miniconda3/lib/libz.so.1.2.11 (found version "1.2.11") 
-- Found PNG: /home/khurram/miniconda3/lib/libpng.so (found version "1.6.34") 
-- Looking for /home/khurram/miniconda3/include/libpng/png.h
-- Looking for /home/khurram/miniconda3/include/libpng/png.h - not found
-- Found OpenEXR: /usr/lib/x86_64-linux-gnu/libIlmImf.so
-- Checking for module 'gtk+-3.0'
--   No package 'gtk+-3.0' found
-- Checking for module 'gtk+-2.0'
--   Found gtk+-2.0, version 2.24.30
-- Checking for module 'gthread-2.0'
--   Found gthread-2.0, version 2.48.2
-- Checking for module 'gtkglext-1.0'
--   No package 'gtkglext-1.0' found
-- Checking for module 'gstreamer-base-1.0'
--   No package 'gstreamer-base-1.0' found
-- Checking for module 'gstreamer-video-1.0'
--   No package 'gstreamer-video-1.0' found
-- Checking for module 'gstreamer-app-1.0'
--   No package 'gstreamer-app-1.0' found
-- Checking for module 'gstreamer-riff-1.0'
--   No package 'gstreamer-riff-1.0' found
-- Checking for module 'gstreamer-pbutils-1.0'
--   No package 'gstreamer-pbutils-1.0' found
-- Checking for module 'gstreamer-base-0.10'
--   Found gstreamer-base-0.10, version 0.10.36
-- Checking for module 'gstreamer-video-0.10'
--   Found gstreamer-video-0.10, version 0.10.36
-- Checking for module 'gstreamer-app-0.10'
--   Found gstreamer-app-0.10, version 0.10.36
-- Checking for module 'gstreamer-riff-0.10'
--   Found gstreamer-riff-0.10, version 0.10.36
-- Checking for module 'gstreamer-pbutils-0.10'
--   Found gstreamer-pbutils-0.10, version 0.10.36
-- Checking for module 'libdc1394-2'
--   Found libdc1394-2, version 2.2.4
-- Looking for linux/videodev2.h
-- Looking for linux/videodev2.h - found
-- Looking for sys/videoio.h
-- Looking for sys/videoio.h - not found
-- Checking for modules 'libavcodec;libavformat;libavutil;libswscale'
--   Found libavcodec, version 58.19.100
--   Found libavformat, version 58.13.100
--   Found libavutil, version 56.15.100
--   Found libswscale, version 5.2.100
-- Checking for module 'libavresample'
--   No package 'libavresample' found
-- IPPICV: Download: ippicv_2019_lnx_intel64_general_20180723.tgz
-- found Intel IPP (ICV version): 2019.0.0 [2019.0.0 Gold]
-- at: /home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/icv
-- found Intel IPP Integration Wrappers sources: 2019.0.0
-- at: /home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/iw
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- CUDA detected: 9.0
-- CUDA NVCC target flags: --expt-relaxed-constexpr;-gencode;arch=compute_52,code=sm_52;-D_FORCE_INLINES
-- Check size of int
-- Check size of int - done
-- Found MKL 2019.0.0 at: /home/khurram/miniconda3
-- LAPACK(MKL): LAPACK_LIBRARIES: /home/khurram/miniconda3/lib/libmkl_intel_lp64.so;/home/khurram/miniconda3/lib/libmkl_sequential.so;/home/khurram/miniconda3/lib/libmkl_core.so;/home/khurram/miniconda3/lib/libmkl_intel_lp64.so;/home/khurram/miniconda3/lib/libmkl_sequential.so;/home/khurram/miniconda3/lib/libmkl_core.so;/home/khurram/miniconda3/lib/libmkl_intel_lp64.so;/home/khurram/miniconda3/lib/libmkl_sequential.so;/home/khurram/miniconda3/lib/libmkl_core.so;-lpthread;-lm;-ldl
-- LAPACK(MKL): Support is enabled.
-- Could NOT find JNI (missing: JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 JAVA_AWT_INCLUDE_PATH) 
-- VTK is not found. Please set -DVTK_DIR in CMake to VTK build directory, or to VTK install subdirectory with VTKConfig.cmake file
-- Performing Test HAVE_C_WNO_UNUSED_VARIABLE
-- Performing Test HAVE_C_WNO_UNUSED_VARIABLE - Success
-- Performing Test HAVE_C_WNO_SHADOW
-- Performing Test HAVE_C_WNO_SHADOW - Success
-- Looking for dlerror in dl
-- Looking for dlerror in dl - found
-- Performing Test HAVE_C_WNO_IMPLICIT_FALLTHROUGH
-- Performing Test HAVE_C_WNO_IMPLICIT_FALLTHROUGH - Failed
-- Performing Test HAVE_C_WNO_UNDEF
-- Performing Test HAVE_C_WNO_UNDEF - Success
-- Performing Test HAVE_C_WNO_SIGN_COMPARE
-- Performing Test HAVE_C_WNO_SIGN_COMPARE - Success
-- ADE: Download: v0.1.1c.zip
-- Performing Test HAVE_CXX_WNO_UNDEF
-- Performing Test HAVE_CXX_WNO_UNDEF - Success
-- Performing Test HAVE_CXX_WNO_MISSING_DECLARATIONS
-- Performing Test HAVE_CXX_WNO_MISSING_DECLARATIONS - Success
-- Performing Test HAVE_CXX_WNO_SHADOW
-- Performing Test HAVE_CXX_WNO_SHADOW - Success
-- Caffe:   NO
-- Could NOT find Protobuf (missing: Protobuf_INCLUDE_DIR) (found version "3.6.0")
-- Protobuf:   NO
-- Glog:   YES
-- Performing Test HAVE_CXX_WNO_UNUSED_PARAMETER
-- Performing Test HAVE_CXX_WNO_UNUSED_PARAMETER - Success
-- Performing Test HAVE_CXX_WNO_UNINITIALIZED
-- Performing Test HAVE_CXX_WNO_UNINITIALIZED - Success
-- Performing Test HAVE_CXX_WNO_UNUSED_FUNCTION
-- Performing Test HAVE_CXX_WNO_UNUSED_FUNCTION - Success
-- Performing Test HAVE_CXX_WNO_UNUSED_VARIABLE
-- Performing Test HAVE_CXX_WNO_UNUSED_VARIABLE - Success
-- Performing Test HAVE_CXX_WNO_ENUM_COMPARE
-- Performing Test HAVE_CXX_WNO_ENUM_COMPARE - Success
-- Performing Test HAVE_CXX_WNO_SUGGEST_OVERRIDE
-- Performing Test HAVE_CXX_WNO_SUGGEST_OVERRIDE - Success
-- Checking for one of the modules 'freetype2'
-- Checking for one of the modules 'harfbuzz'
-- freetype2:   YES
-- harfbuzz:    YES
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /home/khurram/miniconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/khurram/miniconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.2")  
-- Performing Test HAVE_CXX_WNO_INVALID_OFFSETOF
-- Performing Test HAVE_CXX_WNO_INVALID_OFFSETOF - Success
-- Module opencv_ovis disabled because OGRE3D was not found
-- No preference for use of exported gflags CMake configuration set, and no hints for include/library directories provided. Defaulting to preferring an installed/exported gflags CMake configuration if available.
-- Failed to find installed gflags CMake configuration, searching for gflags build directories exported with CMake.
-- Failed to find gflags - Failed to find an installed/exported CMake configuration for gflags, will perform search for installed gflags components.
-- Performing Test GFLAGS_IN_GOOGLE_NAMESPACE
-- Performing Test GFLAGS_IN_GOOGLE_NAMESPACE - Success
-- Checking SFM deps... TRUE
-- CERES support is disabled. Ceres Solver for reconstruction API is required.
-- Performing Test HAVE_CXX_WNO_DEPRECATED_DECLARATIONS
-- Performing Test HAVE_CXX_WNO_DEPRECATED_DECLARATIONS - Success
-- Performing Test HAVE_CXX_WNO_UNUSED_BUT_SET_VARIABLE
-- Performing Test HAVE_CXX_WNO_UNUSED_BUT_SET_VARIABLE - Success
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Performing Test HAVE_CXX_WNO_PARENTHESES
-- Performing Test HAVE_CXX_WNO_PARENTHESES - Success
-- Performing Test HAVE_CXX_WNO_MAYBE_UNINITIALIZED
-- Performing Test HAVE_CXX_WNO_MAYBE_UNINITIALIZED - Success
-- Performing Test HAVE_CXX_WNO_SIGN_PROMO
-- Performing Test HAVE_CXX_WNO_SIGN_PROMO - Success
-- Performing Test HAVE_CXX_WNO_MISSING_PROTOTYPES
-- Performing Test HAVE_CXX_WNO_MISSING_PROTOTYPES - Failed
-- Performing Test HAVE_CXX_WNO_DEPRECATED
-- Performing Test HAVE_CXX_WNO_DEPRECATED - Success
-- Performing Test HAVE_CXX_WNO_UNUSED_LOCAL_TYPEDEFS
-- Performing Test HAVE_CXX_WNO_UNUSED_LOCAL_TYPEDEFS - Success
-- Performing Test HAVE_CXX_WNO_SIGN_COMPARE
-- Performing Test HAVE_CXX_WNO_SIGN_COMPARE - Success
-- Performing Test HAVE_CXX_WNO_TAUTOLOGICAL_UNDEFINED_COMPARE
-- Performing Test HAVE_CXX_WNO_TAUTOLOGICAL_UNDEFINED_COMPARE - Failed
-- Performing Test HAVE_CXX_WNO_IGNORED_QUALIFIERS
-- Performing Test HAVE_CXX_WNO_IGNORED_QUALIFIERS - Success
-- Performing Test HAVE_CXX_WNO_EXTRA
-- Performing Test HAVE_CXX_WNO_EXTRA - Success
-- Performing Test HAVE_CXX_WNO_UNUSED_CONST_VARIABLE
-- Performing Test HAVE_CXX_WNO_UNUSED_CONST_VARIABLE - Failed
-- freetype2:   YES
-- harfbuzz:    YES
-- Performing Test HAVE_CXX_WNO_OVERLOADED_VIRTUAL
-- Performing Test HAVE_CXX_WNO_OVERLOADED_VIRTUAL - Success
-- Checking for modules 'tesseract;lept'
--   No package 'tesseract' found
--   No package 'lept' found
-- Tesseract:   NO
-- Performing Test HAVE_CXX_WNO_IMPLICIT_FALLTHROUGH
-- Performing Test HAVE_CXX_WNO_IMPLICIT_FALLTHROUGH - Failed
-- xfeatures2d/boostdesc: Download: boostdesc_bgm.i
-- xfeatures2d/boostdesc: Download: boostdesc_bgm_bi.i
-- xfeatures2d/boostdesc: Download: boostdesc_bgm_hd.i
-- xfeatures2d/boostdesc: Download: boostdesc_binboost_064.i
-- xfeatures2d/boostdesc: Download: boostdesc_binboost_128.i
-- xfeatures2d/boostdesc: Download: boostdesc_binboost_256.i
-- xfeatures2d/boostdesc: Download: boostdesc_lbgm.i
-- xfeatures2d/vgg: Download: vgg_generated_48.i
-- xfeatures2d/vgg: Download: vgg_generated_64.i
-- xfeatures2d/vgg: Download: vgg_generated_80.i
-- xfeatures2d/vgg: Download: vgg_generated_120.i
-- data: Download: face_landmark_model.dat
-- No preference for use of exported gflags CMake configuration set, and no hints for include/library directories provided. Defaulting to preferring an installed/exported gflags CMake configuration if available.
-- Failed to find installed gflags CMake configuration, searching for gflags build directories exported with CMake.
-- Failed to find gflags - Failed to find an installed/exported CMake configuration for gflags, will perform search for installed gflags components.
-- Checking SFM deps... TRUE
-- CERES support is disabled. Ceres Solver for reconstruction API is required.
-- Performing Test HAVE_CXX_WNO_INCONSISTENT_MISSING_OVERRIDE
-- Performing Test HAVE_CXX_WNO_INCONSISTENT_MISSING_OVERRIDE - Failed
-- Performing Test HAVE_CXX_WNO_UNUSED_PRIVATE_FIELD
-- Performing Test HAVE_CXX_WNO_UNUSED_PRIVATE_FIELD - Failed
-- 
-- General configuration for OpenCV 4.0.0-rc =====================================
--   Version control:               4.0.0-rc
-- 
--   Extra modules:
--     Location (extra):            /home/khurram/LIBRARIES/OPENCV400rc/opencv_contrib/modules
--     Version control (extra):     4.0.0-rc
-- 
--   Platform:
--     Timestamp:                   2018-11-17T22:24:38Z
--     Host:                        Linux 4.15.0-32-generic x86_64
--     CMake:                       3.12.2
--     CMake generator:             Unix Makefiles
--     CMake build tool:            /usr/bin/make
--     Configuration:               Release
-- 
--   CPU/HW features:
--     Baseline:                    SSE SSE2 SSE3
--       requested:                 SSE3
--     Dispatched code generation:  SSE4_1 SSE4_2 FP16 AVX AVX2 AVX512_SKX
--       requested:                 SSE4_1 SSE4_2 AVX FP16 AVX2 AVX512_SKX
--       SSE4_1 (4 files):          + SSSE3 SSE4_1
--       SSE4_2 (1 files):          + SSSE3 SSE4_1 POPCNT SSE4_2
--       FP16 (0 files):            + SSSE3 SSE4_1 POPCNT SSE4_2 FP16 AVX
--       AVX (4 files):             + SSSE3 SSE4_1 POPCNT SSE4_2 AVX
--       AVX2 (10 files):           + SSSE3 SSE4_1 POPCNT SSE4_2 FP16 FMA3 AVX AVX2
--       AVX512_SKX (1 files):      + SSSE3 SSE4_1 POPCNT SSE4_2 FP16 FMA3 AVX AVX2 AVX_512F AVX512_SKX
-- 
--   C/C++:
--     Built as dynamic libs?:      YES
--     C++ Compiler:                /usr/bin/c++  (ver 5.4.0)
--     C++ flags (Release):         -g -Wno-unused   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -O3 -DNDEBUG  -DNDEBUG
--     C++ flags (Debug):           -g -Wno-unused   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -g  -O0 -DDEBUG -D_DEBUG
--     C Compiler:                  /usr/bin/cc
--     C flags (Release):           -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wuninitialized -Winit-self -Wno-narrowing -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -O3 -DNDEBUG  -DNDEBUG
--     C flags (Debug):             -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wuninitialized -Winit-self -Wno-narrowing -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -g  -O0 -DDEBUG -D_DEBUG
--     Linker flags (Release):      
--     Linker flags (Debug):        
--     ccache:                      NO
--     Precompiled headers:         YES
--     Extra dependencies:          m pthread /home/khurram/miniconda3/lib/libHalide.so cudart_static -lpthread dl rt nppc nppial nppicc nppicom nppidei nppif nppig nppim nppist nppisu nppitc npps cublas cufft -L/usr/local/cuda-9.0/lib64 -L/usr/lib/x86_64-linux-gnu
--     3rdparty dependencies:
-- 
--   OpenCV modules:
--     To be built:                 aruco bgsegm bioinspired calib3d ccalib core cudaarithm cudabgsegm cudacodec cudafeatures2d cudafilters cudaimgproc cudaoptflow cudastereo cudawarping cudev datasets dnn dpm face features2d flann freetype fuzzy gapi hdf hfs highgui img_hash imgcodecs imgproc java_bindings_generator line_descriptor ml objdetect optflow phase_unwrapping photo plot python3 python_bindings_generator reg rgbd saliency sfm shape stereo stitching structured_light superres surface_matching text tracking video videoio videostab xfeatures2d ximgproc xphoto
--     Disabled:                    cudalegacy cudaobjdetect dnn_objdetect python2 world xobjdetect
--     Disabled by dependency:      -
--     Unavailable:                 cnn_3dobj cvv java js matlab ovis ts viz
--     Applications:                apps
--     Documentation:               NO
--     Non-free algorithms:         YES
-- 
--   GUI: 
--     GTK+:                        YES (ver 2.24.30)
--       GThread :                  YES (ver 2.48.2)
--       GtkGlExt:                  NO
--     OpenGL support:              NO
--     VTK support:                 NO
-- 
--   Media I/O: 
--     ZLib:                        /home/khurram/miniconda3/lib/libz.so.1.2.11 (ver 1.2.11)
--     JPEG:                        /usr/lib/x86_64-linux-gnu/libjpeg.so (ver 90)
--     WEBP:                        /usr/lib/x86_64-linux-gnu/libwebp.so (ver encoder: 0x0202)
--     PNG:                         /home/khurram/miniconda3/lib/libpng.so (ver 1.6.34)
--     TIFF:                        /home/khurram/miniconda3/lib/libtiff.so (ver 42 / 4.0.9)
--     JPEG 2000:                   /usr/lib/x86_64-linux-gnu/libjasper.so (ver 1.900.1)
--     OpenEXR:                     /usr/lib/x86_64-linux-gnu/libImath.so /usr/lib/x86_64-linux-gnu/libIlmImf.so /usr/lib/x86_64-linux-gnu/libIex.so /usr/lib/x86_64-linux-gnu/libHalf.so /usr/lib/x86_64-linux-gnu/libIlmThread.so (ver 2.2.0)
--     HDR:                         YES
--     SUNRASTER:                   YES
--     PXM:                         YES
--     PFM:                         YES
-- 
--   Video I/O:
--     DC1394:                      YES (ver 2.2.4)
--     FFMPEG:                      YES
--       avcodec:                   YES (ver 58.19.100)
--       avformat:                  YES (ver 58.13.100)
--       avutil:                    YES (ver 56.15.100)
--       swscale:                   YES (ver 5.2.100)
--       avresample:                NO
--     GStreamer:                   
--       base:                      YES (ver 0.10.36)
--       video:                     YES (ver 0.10.36)
--       app:                       YES (ver 0.10.36)
--       riff:                      YES (ver 0.10.36)
--       pbutils:                   YES (ver 0.10.36)
--     v4l/v4l2:                    linux/videodev2.h
-- 
--   Parallel framework:            pthreads
-- 
--   Trace:                         YES (with Intel ITT)
-- 
--   Other third-party libraries:
--     Intel IPP:                   2019.0.0 Gold [2019.0.0]
--            at:                   /home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/icv
--     Intel IPP IW:                sources (2019.0.0)
--               at:                /home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/iw
--     Lapack:                      YES (/home/khurram/miniconda3/lib/libmkl_intel_lp64.so /home/khurram/miniconda3/lib/libmkl_sequential.so /home/khurram/miniconda3/lib/libmkl_core.so /home/khurram/miniconda3/lib/libmkl_intel_lp64.so /home/khurram/miniconda3/lib/libmkl_sequential.so /home/khurram/miniconda3/lib/libmkl_core.so /home/khurram/miniconda3/lib/libmkl_intel_lp64.so /home/khurram/miniconda3/lib/libmkl_sequential.so /home/khurram/miniconda3/lib/libmkl_core.so -lpthread -lm -ldl)
--     Halide:                      YES (/home/khurram/miniconda3/lib/libHalide.so /home/khurram/miniconda3/include/Halide)
--     Eigen:                       YES (ver 3.3.90)
--     Custom HAL:                  NO
--     Protobuf:                    /home/khurram/miniconda3/lib/libprotobuf.so (3.6.0)
-- 
--   NVIDIA CUDA:                   YES (ver 9.0, CUFFT CUBLAS NVCUVID FAST_MATH)
--     NVIDIA GPU arch:             52
--     NVIDIA PTX archs:
-- 
--   OpenCL:                        YES (no extra features)
--     Include path:                /home/khurram/LIBRARIES/OPENCV34/opencv/3rdparty/include/opencl/1.2
--     Link libraries:              Dynamic load
-- 
--   Python 3:
--     Interpreter:                 /home/khurram/miniconda3/bin/python3.5m (ver 3.5.6)
--     Libraries:                   /home/khurram/miniconda3/lib/libpython3.5m.so (ver 3.5.6)
--     numpy:                       /home/khurram/miniconda3/lib/python3.5/site-packages/numpy/core/include (ver 1.15.2)
--     packages path:               /home/khurram/miniconda3/lib/python3.5/site-packages
-- 
--   Python (for build):            /usr/bin/python2.7
-- 
--   Java:                          
--     ant:                         NO
--     JNI:                         NO
--     Java wrappers:               NO
--     Java tests:                  NO
-- 
--   Install to:                    /home/khurram/miniconda3
-- -----------------------------------------------------------------
-- 
-- Configuring done
-- Generating done
-- Build files have been written to: /home/khurram/LIBRARIES/OPENCV34/opencv/build
khurramHazen commented 5 years ago

I have tried multiple rebuilds with slightly different cmake configs (turning troubling modules off each time) but at the end same error occurs. In current case it occurs either at 99% mark (building opencv_annotation, which I have tried to turn off using BUILD_opencv_annotation=OFF, but I don't think there is any such flag) or at 100% (building cv2, I guess it is the python binding generation part). The error is same almost always. (libopencv_core undefined reference). One thing to note here is I am not building Protobuf instead I am trying to use pre-installed protobuf in miniconda folder using following flags and paths:

-D BUILD_PROTOBUF=OFF \
-D PROTOBUF_UPDATE_FILES=ON \
-D PROTOBUF_INCLUDE_DIR=/home/khurram/miniconda3/include \
-D PROTOBUF_LIBRARY=/home/khurram/miniconda3/lib/libprotobuf.so \
-D PROTOBUF_LIBRARY_DEBUG=/home/khurram/miniconda3/lib/libprotobuf.so \
-D PROTOBUF_LITE_LIBRARY=/home/khurram/miniconda3/lib/libprotobuf-lite.so \
-D PROTOBUF_LITE_LIBRARY_DEBUG=/home/khurram/miniconda3/lib/libprotobuf-lite.so \
-D PROTOBUF_PROTOC_EXECUTABLE=/home/khurram/miniconda3/bin/protoc \
-D PROTOBUF_PROTOC_LIBRARY=/home/khurram/miniconda3/lib/libprotoc.so \
-D PROTOBUF_PROTOC_LIBRARY_DEBUG=/home/khurram/miniconda3/lib/libprotoc.so \
khurramHazen commented 5 years ago

Some examples of the errors are given below. (Same error-libopencv_core undefined reference to-at different build position)

1

[ 16%] Linking CXX executable ../../bin/example_phase_unwrapping_unwrap
cd /home/khurram/LIBRARIES/OPENCV34/opencv/build/modules/phase_unwrapping && /home/khurram/miniconda3/bin/cmake -E cmake_link_script CMakeFiles/example_phase_unwrapping_unwrap.dir/link.txt --verbose=1
/usr/bin/c++  -g -H   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -O3 -DNDEBUG  -DNDEBUG    -Wl,--gc-sections   CMakeFiles/example_phase_unwrapping_unwrap.dir/samples/unwrap.cpp.o  -o ../../bin/example_phase_unwrapping_unwrap  -L/usr/local/cuda-9.0/lib64 -Wl,-rpath,/usr/local/cuda-9.0/lib64:/home/khurram/LIBRARIES/OPENCV34/opencv/build/lib ../../lib/libopencv_phase_unwrapping.so.4.0.0 ../../lib/libopencv_highgui.so.4.0.0 ../../lib/libopencv_videoio.so.4.0.0 ../../lib/libopencv_imgcodecs.so.4.0.0 ../../lib/libopencv_imgproc.so.4.0.0 ../../lib/libopencv_core.so.4.0.0 ../../lib/libopencv_cudev.so.4.0.0 
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::allocate(unsigned long)'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::_OutputArray::create(cv::Size_<int>, int, int, bool, int) const'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::error(int, cv::String const&, char const*, char const*, int)'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::deallocate()'
collect2: error: ld returned 1 exit status
modules/phase_unwrapping/CMakeFiles/example_phase_unwrapping_unwrap.dir/build.make:90: recipe for target 'bin/example_phase_unwrapping_unwrap' failed
make[2]: *** [bin/example_phase_unwrapping_unwrap] Error 1
make[2]: Leaving directory '/home/khurram/LIBRARIES/OPENCV34/opencv/build'
CMakeFiles/Makefile2:3110: recipe for target 'modules/phase_unwrapping/CMakeFiles/example_phase_unwrapping_unwrap.dir/all' failed
make[1]: *** [modules/phase_unwrapping/CMakeFiles/example_phase_unwrapping_unwrap.dir/all] Error 2
make[1]: Leaving directory '/home/khurram/LIBRARIES/OPENCV34/opencv/build'
Makefile:162: recipe for target 'all' failed
make: *** [all] Error 2

2

[100%] Building CXX object apps/version/CMakeFiles/opencv_version.dir/opencv_version.cpp.o
cd /home/khurram/LIBRARIES/OPENCV34/opencv/build/apps/version && /usr/bin/c++  -D__OPENCV_APPS=1 -D__OPENCV_BUILD=1 -I/home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/icv/include -I/home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/iw/include -I/home/khurram/LIBRARIES/OPENCV34/opencv/build -I/home/khurram/LIBRARIES/OPENCV34/opencv/modules/core/include -I/home/khurram/LIBRARIES/OPENCV34/opencv_contrib/modules/cudev/include -I/home/khurram/LIBRARIES/OPENCV34/opencv/apps/version/PRIVATE -I/home/khurram/LIBRARIES/OPENCV34/opencv/include/opencv -isystem /usr/local/include/eigen3 -isystem /home/khurram/miniconda3/include  -g   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -O3 -DNDEBUG  -DNDEBUG -fPIE   -std=c++11 -o CMakeFiles/opencv_version.dir/opencv_version.cpp.o -c /home/khurram/LIBRARIES/OPENCV34/opencv/apps/version/opencv_version.cpp
[100%] Linking CXX executable ../../bin/opencv_version
cd /home/khurram/LIBRARIES/OPENCV34/opencv/build/apps/version && /home/khurram/miniconda3/bin/cmake -E cmake_link_script CMakeFiles/opencv_version.dir/link.txt --verbose=1
/usr/bin/c++  -g   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -O3 -DNDEBUG  -DNDEBUG    -Wl,--gc-sections   CMakeFiles/opencv_version.dir/opencv_version.cpp.o  -o ../../bin/opencv_version  -L/usr/local/cuda-9.0/lib64 -Wl,-rpath,/usr/local/cuda-9.0/lib64:/home/khurram/LIBRARIES/OPENCV34/opencv/build/lib: -ldl -lm -lpthread -lrt ../../3rdparty/lib/libippiw.a ../../3rdparty/ippicv/ippicv_lnx/icv/lib/intel64/libippicv.a -lcudart_static -lpthread -ldl -lrt -lnppc -lnppial -lnppicc -lnppicom -lnppidei -lnppif -lnppig -lnppim -lnppist -lnppisu -lnppitc -lnpps -lcublas -lcufft -L/usr/local/cuda-9.0/lib64 -L/usr/lib/x86_64-linux-gnu ../../lib/libopencv_core.so.4.0.0 -lm -lpthread -lcudart_static -lpthread -lnppc -lnppial -lnppicc -lnppicom -lnppidei -lnppif -lnppig -lnppim -lnppist -lnppisu -lnppitc -lnpps -lcublas -lcufft ../../lib/libopencv_cudev.so.4.0.0 
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::allocate(unsigned long)'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::deallocate()'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::_OutputArray::create(cv::Size_<int>, int, int, bool, int) const'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::error(int, cv::String const&, char const*, char const*, int)'
collect2: error: ld returned 1 exit status
apps/version/CMakeFiles/opencv_version.dir/build.make:87: recipe for target 'bin/opencv_version' failed
make[3]: *** [bin/opencv_version] Error 1
make[3]: Leaving directory '/home/khurram/LIBRARIES/OPENCV34/opencv/build'
CMakeFiles/Makefile2:10312: recipe for target 'apps/version/CMakeFiles/opencv_version.dir/all' failed
make[2]: *** [apps/version/CMakeFiles/opencv_version.dir/all] Error 2
make[2]: Leaving directory '/home/khurram/LIBRARIES/OPENCV34/opencv/build'
CMakeFiles/Makefile2:10324: recipe for target 'apps/version/CMakeFiles/opencv_version.dir/rule' failed
make[1]: *** [apps/version/CMakeFiles/opencv_version.dir/rule] Error 2
make[1]: Leaving directory '/home/khurram/LIBRARIES/OPENCV34/opencv/build'
Makefile:2511: recipe for target 'opencv_version' failed
make: *** [opencv_version] Error 2

3

[100%] Building CXX object apps/annotation/CMakeFiles/opencv_annotation.dir/opencv_annotation.cpp.o
cd /home/khurram/LIBRARIES/OPENCV34/opencv/build/apps/annotation && /usr/bin/c++   -D__OPENCV_APPS=1 -D__OPENCV_BUILD=1 -I/home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/icv/include -I/home/khurram/LIBRARIES/OPENCV34/opencv/build/3rdparty/ippicv/ippicv_lnx/iw/include -I/home/khurram/LIBRARIES/OPENCV34/opencv/build -isystem /usr/local/include/eigen3 -isystem /home/khurram/miniconda3/include -I/home/khurram/miniconda3/include/Halide -I/home/khurram/LIBRARIES/OPENCV34/opencv/modules/core/include -I/home/khurram/LIBRARIES/OPENCV34/opencv_contrib/modules/cudev/include -I/home/khurram/LIBRARIES/OPENCV34/opencv/modules/highgui/include -I/home/khurram/LIBRARIES/OPENCV34/opencv/modules/imgproc/include -I/home/khurram/LIBRARIES/OPENCV34/opencv/modules/imgcodecs/include -I/home/khurram/LIBRARIES/OPENCV34/opencv/modules/videoio/include -I/home/khurram/LIBRARIES/OPENCV34/opencv/apps/annotation/PRIVATE -I/home/khurram/LIBRARIES/OPENCV34/opencv/include/opencv  -g   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -O3 -DNDEBUG  -DNDEBUG -fPIE   -std=c++11 -o CMakeFiles/opencv_annotation.dir/opencv_annotation.cpp.o -c /home/khurram/LIBRARIES/OPENCV34/opencv/apps/annotation/opencv_annotation.cpp
/usr/bin/cmake: /home/khurram/miniconda3/lib/libcurl.so.4: no version information available (required by /usr/bin/cmake)
[100%] Linking CXX executable ../../bin/opencv_annotation
cd /home/khurram/LIBRARIES/OPENCV34/opencv/build/apps/annotation && /usr/bin/cmake -E cmake_link_script CMakeFiles/opencv_annotation.dir/link.txt --verbose=1
/usr/bin/cmake: /home/khurram/miniconda3/lib/libcurl.so.4: no version information available (required by /usr/bin/cmake)
/usr/bin/c++   -g   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffast-math -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -O3 -DNDEBUG  -DNDEBUG    -Wl,--gc-sections   CMakeFiles/opencv_annotation.dir/opencv_annotation.cpp.o  -o ../../bin/opencv_annotation  -L/usr/local/cuda/lib64  -L/home/khurram/miniconda3/lib -ldl -lm -lpthread -lrt ../../3rdparty/lib/libippiw.a ../../3rdparty/ippicv/ippicv_lnx/icv/lib/intel64/libippicv.a -lHalide -lcudart -lnppc -lnppial -lnppicc -lnppicom -lnppidei -lnppif -lnppig -lnppim -lnppist -lnppisu -lnppitc -lnpps -lcublas -lcufft -L/usr/local/cuda/lib64 ../../lib/libopencv_highgui.so.4.0.0 ../../lib/libopencv_videoio.so.4.0.0 ../../lib/libopencv_imgcodecs.so.4.0.0 ../../lib/libopencv_imgproc.so.4.0.0 ../../lib/libopencv_core.so.4.0.0 ../../lib/libopencv_cudev.so.4.0.0 -Wl,-rpath,/usr/local/cuda/lib64:/home/khurram/miniconda3/lib:/home/khurram/LIBRARIES/OPENCV34/opencv/build/lib: 
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::allocate(unsigned long)'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::deallocate()'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::_OutputArray::create(cv::Size_<int>, int, int, bool, int) const'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::error(int, cv::String const&, char const*, char const*, int)'
collect2: error: ld returned 1 exit status
apps/annotation/CMakeFiles/opencv_annotation.dir/build.make:103: recipe for target 'bin/opencv_annotation' failed
make[2]: *** [bin/opencv_annotation] Error 1
make[2]: Leaving directory '/home/khurram/LIBRARIES/OPENCV34/opencv/build'
CMakeFiles/Makefile2:10150: recipe for target 'apps/annotation/CMakeFiles/opencv_annotation.dir/all' failed
make[1]: *** [apps/annotation/CMakeFiles/opencv_annotation.dir/all] Error 2
make[1]: Leaving directory '/home/khurram/LIBRARIES/OPENCV34/opencv/build'
Makefile:160: recipe for target 'all' failed
make: *** [all] Error 2

4

[ 99%] Built target opencv_python3
Scanning dependencies of target opencv_annotation
[ 99%] Building CXX object apps/annotation/CMakeFiles/opencv_annotation.dir/opencv_annotation.cpp.o
[ 99%] Linking CXX executable ../../bin/opencv_annotation
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::allocate(unsigned long)'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::_OutputArray::create(cv::Size_<int>, int, int, bool, int) const'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::error(int, cv::String const&, char const*, char const*, int)'
../../lib/libopencv_core.so.4.0.0: undefined reference to `cv::String::deallocate()'
collect2: error: ld returned 1 exit status
apps/annotation/CMakeFiles/opencv_annotation.dir/build.make:93: recipe for target 'bin/opencv_annotation' failed
make[2]: *** [bin/opencv_annotation] Error 1
CMakeFiles/Makefile2:10017: recipe for target 'apps/annotation/CMakeFiles/opencv_annotation.dir/all' failed
make[1]: *** [apps/annotation/CMakeFiles/opencv_annotation.dir/all] Error 2
Makefile:162: recipe for target 'all' failed
make: *** [all] Error 2
khurramHazen commented 5 years ago

@alalek Any suggestion?

alalek commented 5 years ago

String::allocate

Your build logs blame on code removed from OpenCV 4.0. It is available in 3.x only: https://github.com/opencv/opencv/blob/3.4.4/modules/core/include/opencv2/core/cvstd.hpp#L553

We can't fix that we can't reproduce on our side.

Perhaps you have installed OpenCV 3.x before somewhere/somehow.

You should investigate this problem yourself with help of make VERBOSE=1 and gcc -H option (see previous issue for details).

khurramHazen commented 5 years ago

OpenCV 3.4 was installed somehow. Removing it resolved the subjected issue.