chore(deps): bump networkx from 2.6.3 to 2.8.7

[dependabot[bot]]

Bumps networkx from 2.6.3 to 2.8.7.

Release notes

Sourced from networkx's releases.

NetworkX 2.8.7

Full Changelog: https://github.com/networkx/networkx/compare/networkx-2.8.6...networkx-2.8.7

NetworkX 2.8.6

Full Changelog: https://github.com/networkx/networkx/compare/networkx-2.8.5...networkx-2.8.6

NetworkX 2.8.5

Full Changelog: https://github.com/networkx/networkx/compare/networkx-2.8.4...networkx-2.8.5

NetworkX 2.8.4

What's Changed

• Clean up maximal_independent_set tests by @​MridulS in networkx/networkx#5567
• MAINT: Cleanup centrality module, remove unused variables by @​MridulS in networkx/networkx#5308
• importorskip scipy instead of numpy for total spanning tree by @​MridulS in networkx/networkx#5693
• Add initial_graph parameter to scale_free_graph and deprecate create_using by @​rossbar in networkx/networkx#5697
• Add docstring example for attr transfer to linegraph. by @​rossbar in networkx/networkx#5698
• Update ISMAGS.analyze_symmetry docstring. by @​rossbar in networkx/networkx#5696
• Add default value p=2 for minkowski distance metric. by @​rossbar in networkx/networkx#5700
• Use inline math by @​szhorvat in networkx/networkx#5701
• Update multigraph docstrings to reflect remove_edges_from behavior. by @​rossbar in networkx/networkx#5699
• Update simple_cycles docstring w/ yields and examples by @​rossbar in networkx/networkx#5709
• Chromatic polynomial by @​lucasmccabe in networkx/networkx#5675
• Catch ':' explicitly while working with pydot by @​MridulS in networkx/networkx#5710
• Revert "Add workaround for pytest failures on 3.11b2" by @​rossbar in networkx/networkx#5717
• Default to lightmode for documentation by @​rossbar in networkx/networkx#5715
• Dont compute all biconnected components in is_biconnected() by @​matusvalo in networkx/networkx#5688
• Some more changes to make pytest-randomly happy by @​MridulS in networkx/networkx#5719
• Add durations flag to coverage run on CI. by @​rossbar in networkx/networkx#5718
• Recover order of layers in multipartite_layout when layers are sortable by @​rossbar in networkx/networkx#5705
• Update doc requirements by @​jarrodmillman in networkx/networkx#5711
• Touchups to MG and MDG edges docstrings. by @​rossbar in networkx/networkx#5708
• Add PendingDeprecation for pydot by @​jarrodmillman in networkx/networkx#5721
• Add example of topo_order kwarg to dag_longest_path by @​rossbar in networkx/networkx#5728
• CI: add pytest-randomly workflow. by @​rossbar in networkx/networkx#4553

New Contributors

• @​szhorvat made their first contribution in networkx/networkx#5701

Full Changelog: https://github.com/networkx/networkx/compare/networkx-2.8.3...networkx-2.8.4

NetworkX 2.8.3

What's Changed

• added example to closeness.py by @​Lukong123 in networkx/networkx#5645
• Extract valid kwds from the function signature for draw_networkx_* by @​MridulS in networkx/networkx#5660
• Error out when pydot fails to correctly parse node names by @​MridulS in networkx/networkx#5667
• Remove redundant py2 numeric conversions - Take 2 by @​MridulS in networkx/networkx#5661
• Correcting a typo in the references by @​RATCOinc in networkx/networkx#5677
• Add workaround for pytest failures on 3.11b2 by @​rossbar in networkx/networkx#5680
• Moved random_spanning_tree to public API by @​mjschwenne in networkx/networkx#5656
• More tests for clustering (upstreaming from graphblas-algorithms) by @​eriknw in networkx/networkx#5673

... (truncated)

Commits

• 11d2d8e Designate 2.8.7 release
• c7088c5 Update linters (#6006)
• 0778394 Add Tidelift security vulnerability link (#6001)
• 743b621 Fix failing example due to mpl 3.6 colorbar. (#5994)
• cc54f73 Update documentation header links for latest pydata-sphinx-theme (#5966)
• deda4c3 Minor docstring touchups and test refactor for is_path (#5967)
• f1d03e9 Change is_path to return False when node not in G instead of raising exceptio...
• 0956e84 Improved documentation for all_simple_paths (#5944)
• 5aeda33 Updated networkx/classes/function.py . Solves Issue #5463 (#5474)
• a8a320b docstring updates for union, disjoint_union, and compose (#5892)
• Additional commits viewable in compare view

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[dependabot[bot]]

Superseded by #136.