During validation, it'll be easiest if we can compute energies using the same engine. @dscerutti can choose to use AMBER or OpenMM for this -- We already have lots of examples of going from OpenMM to AMBER, but this Issue is to find a code snippet to convert the AMBER prmtop to an OpenMM System.
During validation, it'll be easiest if we can compute energies using the same engine. @dscerutti can choose to use AMBER or OpenMM for this -- We already have lots of examples of going from OpenMM to AMBER, but this Issue is to find a code snippet to convert the AMBER prmtop to an OpenMM System.