Deep down in the codebase (openff-benchmark-->qcsubmit-->OpenFF toolkit-->RDKit-->InChI toolkit), we use InChI to compare molecules. This raises concerning-looking warnings [1] that probably don't affect our workflow, since the InChI representation doesn't affect the original molecule, and the reported actions are what we WANT InChI to be doing (eg, generating a standardized charge form of the molecule). It would be convenient to squelch the warnings so that users don't get concerned.
Deep down in the codebase (openff-benchmark-->qcsubmit-->OpenFF toolkit-->RDKit-->InChI toolkit), we use InChI to compare molecules. This raises concerning-looking warnings [1] that probably don't affect our workflow, since the InChI representation doesn't affect the original molecule, and the reported actions are what we WANT InChI to be doing (eg, generating a standardized charge form of the molecule). It would be convenient to squelch the warnings so that users don't get concerned.
[1] eg