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opengeostat / pygslib

GSLIB fortran code wrapped into python
MIT License
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Cpython Code not Reading from Correct Location #39

Open djcurill opened 4 years ago

djcurill commented 4 years ago

I am currently trying to setup the pygslib library with my computer (Mac OSX Catalina 10.15.1) but I am receiving the following traceback:

`--------------------------------------------------------------------------- ImportError Traceback (most recent call last)

in ----> 1 import pygslib ~/opt/anaconda3/envs/deepmine/lib/python3.6/site-packages/pygslib/__init__.py in 24 25 # import pygslib modules (compatible with python 3x) ---> 26 from . import drillhole, blockmodel, vtktools, nonlinear, sandbox, gslib, plothtml, charttable, progress 27 28 from . import version ~/opt/anaconda3/envs/deepmine/lib/python3.6/site-packages/pygslib/gslib/__init__.py in 40 41 #gslib fortran code ---> 42 from . import __gslib__kt3d 43 from . import __gslib__postik 44 from . import __read_gslib ImportError: dlopen(/Users/daniel.curilla@ibm.com/opt/anaconda3/envs/deepmine/lib/python3.6/site-packages/pygslib/gslib/__gslib__kt3d.cpython-36m-darwin.so, 2): Library not loaded: /usr/local/gfortran/lib/libgfortran.3.dylib Referenced from: /Users/daniel.curilla@ibm.com/opt/anaconda3/envs/deepmine/lib/python3.6/site-packages/pygslib/gslib/__gslib__kt3d.cpython-36m-darwin.so Reason: image not found` Not sure why `__gslib__kt3d.cpython-36m-darwin.so` is reading from my /usr/local directory. In addition, when trying `from pysgslib.drillhole import Drillhole` I end up with the following error statement: `AttributeError: type object 'pygslib.drillhole.Drillhole' has no attribute '__reduce_cython__'` Any help on this matter would be greatly appreciated!
djcurill commented 4 years ago

Following the instructions in Issue #12 I am now able to get the drillhole module to work. However, I am having some troubled importing the kt3d file when calling import pygslib. Continuing to look into this today.

markjuvert commented 4 years ago

@djcurill , did you have any luck with the kt3d? I'm facing the same problem here.

File "C:\ProgramData\Anaconda3\lib\site-packages\pygslib\gslib__init__.py", line 1233, in kt3d assert parameters['bhid'] is not None, 'Error: BHID required if nbhid > 0' KeyError: 'bhid' Please let me know if you got a breakthrough. Thanks

markjuvert commented 4 years ago

Good day guys. Have anyone found a solution to the kt3d problem? I still get the following error.

TypeError Traceback (most recent call last) ~/opt/anaconda3/lib/python3.6/site-packages/pygslib/gslib/init.py in kt3d(parameters) 1327 output['outlagr'], -> 1328 output['outwmean']) =gslibkt3d.pykt3d(**parameters) 1329

TypeError: 'bhidint' is an invalid keyword argument for this function

During handling of the above exception, another exception occurred:

NameError Traceback (most recent call last)

in 354 355 # estimating in one block --> 356 estimate, debug, summary = pygslib.gslib.kt3d(kt3d_Parameters) ~/opt/anaconda3/lib/python3.6/site-packages/pygslib/gslib/__init__.py in kt3d(parameters) 1330 except: 1331 -> 1332 raise NameError('unexpected error in FORTRAN kt3d code') 1333 1334 NameError: unexpected error in FORTRAN kt3d code Please if anyone found a fix, I would greatly appreciate. Thanks!
opengeostat commented 3 years ago

I uploaded the conda package of pygslib v 0.0.0.6 for mac, linux and windows for Python 3.8. Please try and let me know if it works. This conda package has libgfortran as a dependency.