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opengm / MPLP

Implementation of MPLP by Amir Globerson, David Sontag, Do Kook Choe, & Yitao Li
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uai file generation #1

Open ever4cyth opened 9 years ago

ever4cyth commented 9 years ago

Dear developer,

I am able to compile and run the solver program with the uai files provided on dsontag's website. but is there a script to generate the uai file? I am particularly interested in Protein protein interaction problem descibed in UAI 2012 paper. Really appreciate if you can give me a hand on this.

joergkappes commented 9 years ago

Hi, this repro is only a patched version of the code of David Sontag which we have patched to use it in our OpenGM project. OpenGM provides You interfaced to builf graphical models in form of a factor graph and store it into hdf5 files. for those we have converters to the uai-format. Alternatively You can also use the solvers, including MPLP, directly from OpenGM.

In a nutshell: https://github.com/opengm/opengm