Open whedon opened 2 years ago
Hello human, I'm @whedon, a robot that can help you with some common editorial tasks. @sconde, @ThomasA it looks like you're currently assigned to review this paper :tada:.
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Wordcount for paper.md
is 1077
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.18260/1-2--32072 is OK
- 10.22369/issn.2153-4136/9/1/3 is OK
MISSING DOIs
- None
INVALID DOIs
- None
Software report (experimental):
github.com/AlDanial/cloc v 1.88 T=0.14 s (553.1 files/s, 67170.7 lines/s)
-------------------------------------------------------------------------------
Language files blank comment code
-------------------------------------------------------------------------------
Markdown 28 447 0 2080
MATLAB 21 136 329 1779
Qt 2 0 0 1601
Python 15 178 200 1181
TeX 6 130 87 730
Jupyter Notebook 5 0 420 90
HTML 1 17 12 55
-------------------------------------------------------------------------------
SUM: 78 908 1048 7516
-------------------------------------------------------------------------------
Statistical information for the repository '6d2c3ae50c994dd5b553e539' was
gathered on 2021/10/11.
The following historical commit information, by author, was found:
Author Commits Insertions Deletions % of changes
Ashlee Ford Versypt 2 1598 20 100.00
Below are the number of rows from each author that have survived and are still
intact in the current revision:
Author Rows Stability Age % in comments
Ashlee Ford Versypt 1578 98.7 0.0 9.19
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
👋 @ashleefv @sconde, @ThomasA the actual review will take place in this issue. Thanks!
@kyleniemeyer I somehow did not manage to accept the invite for the review repository. At least I cannot check the boxes in this review issue. Can you resend the invite?
@whedon re-invite @ThomasA as reviewer
The reviewer already has a pending invite.
@thomasa please accept the invite by clicking this link: https://github.com/openjournals/jose-reviews/invitations
:wave: @ThomasA, please update us on how your review is going (this is an automated reminder).
:wave: @sconde, please update us on how your review is going (this is an automated reminder).
Hi everyone! Could we have a little update? When do you think you could tick off a few more items of your checklist, @sconde @ThomasA ?
Sorry, I have been swamped by work lately. Have been working on #138 tonight. I hope to complete this one within the next couple of days.
[ ] A statement of need: Do the authors clearly state the need for this module and who the target audience is?
- [ ] Installation instructions: Is there a clearly stated list of dependencies?
- Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the module 2) Report issues or problems with the module 3) Seek support
Hi @ashleefv, sorry for the delay here—checking back on this now. I see that @sconde left some issues related to the review, have you been able to address those yet?
@ThomasA have you had a chance to work on your review?
Other deadlines have delayed me in addressing the reviewer's comments, but I have received them.
Ashlee N. Ford Versypt, Ph.D. (she, her, hers) Associate Professor Department of Chemical and Biological Engineering University at Buffalo, The State University of New York 507 Furnas Hall, Buffalo, NY 14260 @.*** http://www.cbe.buffalo.edu/fordversypt
From: Kyle Niemeyer @.> Sent: Friday, February 11, 2022 3:55 PM To: openjournals/jose-reviews @.> Cc: Ashlee Ford Versypt @.>; Mention @.> Subject: Re: [openjournals/jose-reviews] [REVIEW]: ApplNumComp: An Open Access Introductory Course for Applied Numerical Computing (#143)
Hi @ashleefvhttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fashleefv&data=04%7C01%7Cashleefv%40buffalo.edu%7C46d0b3c359c74c9b404308d9eda0da59%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637802097386928025%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=4yUFChAf9j75f242P8MitRTjA97NsCsgGTSnH45hADw%3D&reserved=0, sorry for the delay here—checking back on this now. I see that @scondehttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fsconde&data=04%7C01%7Cashleefv%40buffalo.edu%7C46d0b3c359c74c9b404308d9eda0da59%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637802097386928025%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=F9YL%2BeFUb0K9%2BPUKHYMXzq2kqOCiwoV8p9Riz%2Fcib9Q%3D&reserved=0 left some issues related to the review, have you been able to address those yet?
@ThomasAhttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FThomasA&data=04%7C01%7Cashleefv%40buffalo.edu%7C46d0b3c359c74c9b404308d9eda0da59%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637802097386928025%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=QFldKaXs7R8F6x4407TWXzxlU4iJqTa1Eh8VN8HB0FM%3D&reserved=0 have you had a chance to work on your review?
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Hi @ashleefv, have you been able to make progress on the submission?
Part of my delay was also hoping I'd get comments back from more than 1 reviewer. So far only one has shared the feedback on this review forum. The other said in Nov. that they were working on it, but I haven't seen the critique.
On Apr 6, 2022 12:49 PM, Kyle Niemeyer @.***> wrote:
Hi @ashleefvhttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fashleefv&data=04%7C01%7Cashleefv%40buffalo.edu%7C3859a88b38aa45b973cd08da17ed6868%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637848605689459397%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=zJK8HKoZXLbla5TzthQgs%2BLRDKlHokL%2F7mJVhuINFnM%3D&reserved=0, have you been able to make progress on the submission?
— Reply to this email directly, view it on GitHubhttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fopenjournals%2Fjose-reviews%2Fissues%2F143%23issuecomment-1090485739&data=04%7C01%7Cashleefv%40buffalo.edu%7C3859a88b38aa45b973cd08da17ed6868%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637848605689459397%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=J2qYpnEgaEjAZtJWjGGIlo%2BFk9JYedJdGw834qMQoyU%3D&reserved=0, or unsubscribehttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FADAP4NS3PVR4CONL3SRBYO3VDW6BJANCNFSM5FYZDWRQ&data=04%7C01%7Cashleefv%40buffalo.edu%7C3859a88b38aa45b973cd08da17ed6868%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637848605689459397%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=2Q%2BA7CP9ddfneFgbgdhIrKqbWw94uGZHFOu%2FNyJr0qc%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>
I am terribly sorry I have not been very responsive. I have been quite overwhelmed at work due to my team being severely decimated. I should be able to finish this review over Easter.
Any updates on the review?
Ashlee N. Ford Versypt, Ph.D. (she, her, hers) Associate Professor, Department of Chemical and Biological Engineering Core Faculty, Institute for Computational and Data Sciences Affiliated Faculty, Department of Engineering Education University at Buffalo, The State University of New York 507 Furnas Hall, Buffalo, NY 14260 @.*** http://www.cbe.buffalo.edu/fordversypt
From: Thomas Arildsen @.> Sent: Saturday, April 9, 2022 7:37 AM To: openjournals/jose-reviews @.> Cc: Ashlee Ford Versypt @.>; Mention @.> Subject: Re: [openjournals/jose-reviews] [REVIEW]: ApplNumComp: An Open Access Introductory Course for Applied Numerical Computing (#143)
I am terribly sorry I have not been very responsive. I have been quite overwhelmed at work due to my team being severely decimated. I should be able to finish this review over Easter.
— Reply to this email directly, view it on GitHubhttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fopenjournals%2Fjose-reviews%2Fissues%2F143%23issuecomment-1093944427&data=04%7C01%7Cashleefv%40buffalo.edu%7C85d910bd5d0347f174ce08da1a1d4e6a%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637851010423250586%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=%2FI7ythWQVileEN9%2FeONjFNWEKhJvjfxnVTom2KBeSh4%3D&reserved=0, or unsubscribehttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FADAP4NWLXSCMCCSIU5VHWK3VEFTW7ANCNFSM5FYZDWRQ&data=04%7C01%7Cashleefv%40buffalo.edu%7C85d910bd5d0347f174ce08da1a1d4e6a%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C637851010423250586%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=fTiiGjhjNXf1ByPTgPyc6WUQ9ZjYFaX3v2bEhcDM8k8%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>
Sorry for the (major) delay here - I checked in with @ThomasA via email and he will complete his review soon
@ashleefv – an update that we are reaching out to the reviewers via other channels. Will keep trying to get this to the finish line!
- Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the module 2) Report issues or problems with the module 3) Seek support
@ashleefv This issue still needs to be resolved.
- [ ] Version: Does the release version given match the repository release (v1.1)?
@ashleefv, does the release version need to be updated to reflect the changes you've made?
I haven't made any changes in response to the first reviewer because I never got a second reviewer comments.
On Dec 30, 2022 3:41 PM, Sidafa Conde @.***> wrote:
@ashleefvhttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fashleefv&data=05%7C01%7Cashleefv%40buffalo.edu%7C2121e46e64fd449cff7c08daeaaea105%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638080333016424451%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=lg0Mf3jnhpTj3mkmZwDwuzz3JlmhHyCor%2FplvZnIEVo%3D&reserved=0, does the release version need to be updated to reflect the changes you've made?
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@ashleefv I realize that I haven't done a great job shepherding this review along—hopefully we can get this wrapped up "soon".
Like JOSS, JOSE reviews are not meant to be monolithic, requiring a response to both reviewers after the reviews are complete in the traditional manner.
Instead, recognizing the software-adjacent nature of the work, as reviewers provide comments and raise issues one-by-one, they can be addressed along the way, in a more continuous and conversational way in here.
(It's also easier for a second reviewer to just give a thumbs up if you have already addressed things raised here.)
So, please do work on addressing those issues if you can.
- Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the module 2) Report issues or problems with the module 3) Seek support
I second this issue
Regarding the statement of need, I find it well described in the paper while it is not that clear in the repository documentation as such (looking at the README.md).
Regarding "telling the story", I think the paper does this somewhat, but the author's additional paper https://doi.org/10.18260/1-2--32072 referenced therein seems to do this even more so. I think it is fine that interested readers can go there for more information.
Aside from the few remarks above, I think this looks like an excellent and coherent collection of introductory educational material for the topics the module covers. I apologise for the insanely long time I took to get around to completing this review.
All that remains is the community guidelines @ashleefv
@ashleefv, any update on the guidelines?
Submitting author: !--author-handle-->@ashleefv<!--end-author-handle-- (Ashlee N. Ford Versypt) Repository: https://github.com/ashleefv/ApplNumComp Branch with paper.md (empty if default branch): Version: v1.1 Editor: !--editor-->@kyleniemeyer<!--end-editor-- Reviewers: @sconde, @ThomasA Archive: Pending
Status
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Reviewers and authors:
Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)
Reviewer instructions & questions
@sconde & @ThomasA, please carry out your review in this issue by updating the checklist below. If you cannot edit the checklist please:
The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @kyleniemeyer know.
✨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest ✨
Review checklist for @sconde
Conflict of interest
Code of Conduct
General checks
Documentation
Pedagogy / Instructional design (Work-in-progress: reviewers, please comment!)
JOSE paper
paper.md
file include a list of authors with their affiliations?Review checklist for @ThomasA
Conflict of interest
Code of Conduct
General checks
Documentation
Pedagogy / Instructional design (Work-in-progress: reviewers, please comment!)
JOSE paper
paper.md
file include a list of authors with their affiliations?