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Reviews for the Journal of Open Source Education (JOSE)
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[PRE REVIEW]: The University of Toronto Climate Downscaling Workflow: Tools and Resources for Climate Change Impact Analysis #234

Closed editorialbot closed 5 months ago

editorialbot commented 8 months ago

Submitting author: !--author-handle-->@mikemorris12<!--end-author-handle-- (Michael Morris) Repository: https://github.com/mikemorris12/UTCDW_Guidebook/ Branch with paper.md (empty if default branch): JOSE-submission Version: v1.0 Editor: !--editor-->@acocac<!--end-editor-- Reviewers: @aulemahal, @brian-rose Managing EiC: Lorena Barba

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Markdown: [![status](https://jose.theoj.org/papers/2c5db4cc1b1668693b3aabb62501fe58/status.svg)](https://jose.theoj.org/papers/2c5db4cc1b1668693b3aabb62501fe58)

Author instructions

Thanks for submitting your paper to JOSE @mikemorris12. Currently, there isn't a JOSE editor assigned to your paper.

@mikemorris12 if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSE submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

@editorialbot commands
editorialbot commented 8 months ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf
editorialbot commented 8 months ago
Software report:

github.com/AlDanial/cloc v 1.88  T=0.66 s (355.7 files/s, 253590.4 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                            40           6325            283          25875
JavaScript                      21           4573           4489          16561
Jupyter Notebook                79              0          84582          15583
CSS                             12            811            115           2904
PO File                         45           1007              0           2284
YAML                             5              8              6            834
TeX                              2             35              0            528
Markdown                        25            313              0            441
Python                           2            119            281            250
SVG                              5              0              1             29
-------------------------------------------------------------------------------
SUM:                           236          13191          89757          65289
-------------------------------------------------------------------------------

gitinspector failed to run statistical information for the repository
editorialbot commented 8 months ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1175/JCLI-D-14-00754.1 is OK
- 10.5194/hess-20-1483-2016 is OK
- 10.1017/9781108601269 is OK
- 10.21105/jose.00100 is OK
- 10.1017/9781107588783 is OK
- 10.5194/gmd-9-1937-2016 is OK

MISSING DOIs

- None

INVALID DOIs

- None
editorialbot commented 8 months ago

Wordcount for paper.md is 1254

labarba commented 8 months ago

@mikemorris12 👋 Let me start with an apology: I am the editor-in-chief and I have neglected JOSE for several months due to plain overwhelm. I have cut down on other service and am back here with intention of reviving our little alt-journal. Thank you for your submission! Given the time that has passed, do you have updates to the paper?

editorialbot commented 8 months ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

mikemorris12 commented 8 months ago

@mikemorris12 👋 Let me start with an apology: I am the editor-in-chief and I have neglected JOSE for several months due to plain overwhelm. I have cut down on other service and am back here with intention of reviving our little alt-journal. Thank you for your submission! Given the time that has passed, do you have updates to the paper?

Hi @labarba, thanks for considering our submission. There are indeed a few minor changes to the UTCDW-Guidebook repo that have been made since initial submission. The changes are only minor typo fixes, nothing particularly substantive regarding the content and no changes to paper.md. I've just now merged the changes from the main branch into the JOSE-Submission branch, I hope that's ok!

labarba commented 7 months ago

@editorialbot invite @acocac as editor

editorialbot commented 7 months ago

Invitation to edit this submission sent!

mikemorris12 commented 7 months ago

Hi @acocac, looking forward to hearing your thoughts on our work. My coauthors and I would like to suggest the following people as potential reviewers:

Thanks again for considering our submission to JOSE.

acocac commented 7 months ago

@editorialbot commands

editorialbot commented 7 months ago

Hello @acocac, here are the things you can ask me to do:


# List all available commands
@editorialbot commands

# Add to this issue's reviewers list
@editorialbot add @username as reviewer

# Remove from this issue's reviewers list
@editorialbot remove @username from reviewers

# Get a list of all editors's GitHub handles
@editorialbot list editors

# Assign a user as the editor of this submission
@editorialbot assign @username as editor

# Remove the editor assigned to this submission
@editorialbot remove editor

# Remind an author, a reviewer or the editor to return to a review after a 
# certain period of time (supported units days and weeks)
@editorialbot remind @reviewer in 2 weeks

# Check the references of the paper for missing DOIs
@editorialbot check references

# Perform checks on the repository
@editorialbot check repository

# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist

# Set a value for version
@editorialbot set v1.0.0 as version

# Set a value for branch
@editorialbot set jose-paper as branch

# Set a value for repository
@editorialbot set https://github.com/organization/repo as repository

# Set a value for the archive DOI
@editorialbot set set 10.5281/zenodo.6861996 as archive

# Mention the EiCs for the correct track
@editorialbot ping track-eic

# Generates the pdf paper
@editorialbot generate pdf

# Recommends the submission for acceptance
@editorialbot recommend-accept

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@editorialbot generate preprint

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@editorialbot query scope

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@editorialbot list reviewers

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@editorialbot create post-review checklist

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@editorialbot start review
acocac commented 7 months ago

@editorialbot check repository

editorialbot commented 7 months ago
Software report:

github.com/AlDanial/cloc v 1.88  T=0.60 s (397.9 files/s, 283090.6 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                            40           6215            246          25723
JavaScript                      21           4573           4489          16561
Jupyter Notebook                80              0          85040          15823
CSS                             12            809            115           2904
PO File                         45           1007              0           2284
YAML                             5              8              6            834
TeX                              2             35              0            528
Markdown                        25            313              0            441
Python                           2            119            281            250
SVG                              5              0              1             29
-------------------------------------------------------------------------------
SUM:                           237          13079          90178          65377
-------------------------------------------------------------------------------

gitinspector failed to run statistical information for the repository
editorialbot commented 7 months ago

Wordcount for paper.md is 1254

acocac commented 7 months ago

@editorialbot check references

editorialbot commented 7 months ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1175/JCLI-D-14-00754.1 is OK
- 10.5194/hess-20-1483-2016 is OK
- 10.1017/9781108601269 is OK
- 10.21105/jose.00100 is OK
- 10.1017/9781107588783 is OK
- 10.5194/gmd-9-1937-2016 is OK

MISSING DOIs

- None

INVALID DOIs

- None
acocac commented 7 months ago

Hi @mikemorris12, thanks for submitting. I went through the resource and draft of the paper. I understand the novelty of the resource and endorse the use of scalable scientific python ecosystem e..g Pangeo.

Before passing this to reviewers, I suggest some improvements in the submitted paper according to the guidelines for authors:

Wordcount for paper.md is 1254

  • The expected length is around 1000 words max. Please consider to rephrase or remove some sentences from the article.

Please feel free to consider above suggestions, in particular to adhere to the suggested length for JOSE papers.

acocac commented 7 months ago

Hi @acocac, looking forward to hearing your thoughts on our work. My coauthors and I would like to suggest the following people as potential reviewers:

  • Brian Rose, from the Department of Atmospheric & Environmental Sciences at SUNY Albany.
  • Pascal Bourgault, Emilie Bresson, or Travis Logan from Ouranos.
  • Kevin Schwarzchild, from the Department of Earth and Environmental Sciences at Columbia University.
  • James Rising, from the School of Marine Science & Policy at the University of Delaware.

Thanks again for considering our submission to JOSE.

Re the suggested reviewers, I've only found GitHub handles for Brian Rose, Pascal Bourgault and James Rising. According to your approval, I'll contact them after you address my initial observations of the submission.

acocac commented 7 months ago

@editorialbot assign @acocac as editor

editorialbot commented 7 months ago

Assigned! @acocac is now the editor

acocac commented 7 months ago

@mikemorris12 I wondered if you've read my messages above. I suggest implementing above suggestions to proceed to the review phase.

mikemorris12 commented 7 months ago

@acocac I have seen your messages, and I apologize for the delay. My coauthors and I recently hosted a hackathon based around the UTCDW Guidebook materials, and since you asked for discussion of experience using the materials for teaching, we felt it would be best to include a brief discussion of how the hackathon participants responded to the Guidebook in this new section of the paper. I am awaiting approval from the coauthors before submitting the revised paper, it shouldn't take much longer until we're ready to proceed.

acocac commented 7 months ago

@acocac I have seen your messages, and I apologize for the delay. My coauthors and I recently hosted a hackathon based around the UTCDW Guidebook materials, and since you asked for discussion of experience using the materials for teaching, we felt it would be best to include a brief discussion of how the hackathon participants responded to the Guidebook in this new section of the paper. I am awaiting approval from the coauthors before submitting the revised paper, it shouldn't take much longer until we're ready to proceed.

Great - I'm glad to hear you'll incorporate the experience of the hackathon! Feel free to report back when the paper is ready.

acocac commented 6 months ago

@mikemorris12 can you confirm the status of the suggested changes before starting review?

mikemorris12 commented 6 months ago

@mikemorris12 can you confirm the status of the suggested changes before starting review?

Hi @acocac, I sincerely apologize for the delay. The paper is now ready for review.

acocac commented 6 months ago

@editorialbot check repository

editorialbot commented 6 months ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.41 s (584.6 files/s, 427596.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                            41           6668            288          27461
Jupyter Notebook                83              0          88840          17821
JavaScript                      21           4573           4489          16561
CSS                             12            811            115           2904
PO File                         45           1007              0           2284
YAML                             6              8              6           1203
TeX                              2             32              0            494
Markdown                        25            316              0            447
Python                           2            119            281            250
SVG                              5              0              1             29
-------------------------------------------------------------------------------
SUM:                           242          13534          94020          69454
-------------------------------------------------------------------------------

Commit count by author:

   156  mike-morris-codes
    15  Michale Morris
editorialbot commented 6 months ago

Paper file info:

📄 Wordcount for paper.md is 1069

✅ The paper includes a Statement of need section

editorialbot commented 6 months ago

License info:

🔴 License found: Creative Commons Attribution Share Alike 4.0 International (Not OSI approved)

acocac commented 6 months ago

@editorialbot generate pdf

editorialbot commented 6 months ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

acocac commented 6 months ago

Hi @brian-rose — the primary author of a submission to JOSE (The Journal of Open Source Education) has suggested you as a potential reviewer. Could you take a look at this submission and let us know if you might be able to volunteer a review for us? We aim for reviews to be completed within about 2-4 weeks. Please let me know if any of you require some more time.

Thanks! 🙏

Title: "The University of Toronto Climate Downscaling Workflow: Tools and Resources for Climate Change Impact Analysis" View article proof on GitHub 📄 👈

acocac commented 6 months ago

Hi @aulemahal - the primary author of a submission to JOSE (The Journal of Open Source Education) has suggested you as a potential reviewer. Could you take a look at this submission and let us know if you might be able to volunteer a review for us? We aim for reviews to be completed within about 2-4 weeks. Please let me know if any of you require some more time.

Thanks! 🙏

Title: "The University of Toronto Climate Downscaling Workflow: Tools and Resources for Climate Change Impact Analysis" View article proof on GitHub 📄 👈

aulemahal commented 6 months ago

Hi @acocac , I am able to review this paper, and willing to do so. I see that you have guidelines for reviewers and at first glance, I think I can do that!

acocac commented 6 months ago

Hi @acocac , I am able to review this paper, and willing to do so. I see that you have guidelines for reviewers and at first glance, I think I can do that!

Great - Thanks for the quick and positive response! JOSE reviews are checklist-driven to facilitate the assessment of the submission. We should wait the acceptance of another reviewer to start the review.

acocac commented 6 months ago

@mikemorris12 - fyi, I haven't received any response from Brian Rose, so I'll proceed to contact other suggested reviewers. Apologies for delays on starting the review of your submission.

acocac commented 5 months ago

@editorialbot list reviewers

editorialbot commented 5 months ago

Here's the current list of reviewers: https://bit.ly/jose-reviewers

brian-rose commented 5 months ago

@acocac I can do this review! Sorry I got buried in tasks and requests in the second half of my semester but starting to dig myself out now. I should be able to get this done next week.

acocac commented 5 months ago

@acocac I can do this review! Sorry I got buried in tasks and requests in the second half of my semester but starting to dig myself out now. I should be able to get this done next week.

Hi @brian-rose, thanks for the update. It's great to have you as a reviewer of this submission contributing to the climate science community!

I'll open a REVIEW issue to start the formal review.

acocac commented 5 months ago

@editorialbot add @aulemahal as reviewer

editorialbot commented 5 months ago

@aulemahal added to the reviewers list!

acocac commented 5 months ago

@editorialbot add @brian-rose as reviewer

editorialbot commented 5 months ago

@brian-rose added to the reviewers list!

acocac commented 5 months ago

@editorialbot start review

editorialbot commented 5 months ago

OK, I've started the review over in https://github.com/openjournals/jose-reviews/issues/243.