[PRE REVIEW]: ParFlow Sand Tank: A tool for groundwater exploration

whedon commented 3 years ago

Submitting author: @lecondon (Laura Condon) Repository: https://github.com/hydroframe/SandTank Version: v1.0.6 Editor: @JasonJWilliamsNY Reviewers: @djlampert, @bjrubinstein

Author instructions

Thanks for submitting your paper to JOSE @lecondon. Currently, there isn't an JOSE editor assigned to your paper.

@lecondon if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSE and may be suitable for this submission.

Editor instructions

The JOSE submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

whedon commented 3 years ago

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

:warning: JOSE reduced service mode :warning:

Due to the challenges of the COVID-19 pandemic, JOSE is currently operating in a "reduced service mode".

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

whedon commented 3 years ago

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1038/s41467-020-14688-0 is OK
- 10.1002/eco.2042 is OK
- 10.1126/sciadv.aav4574 is OK
- DOI: 10.1126/science.aaf7891 is OK
- 10.1016/j.advwatres.2005.08.006 is OK
- doi:10.1175/JHM422.1 is OK

MISSING DOIs

- None

INVALID DOIs

- https://doi.org/10.1016/j.advwatres.2014.09.006 is INVALID because of 'https://doi.org/' prefix

whedon commented 3 years ago

Failed to discover a Statement of need section in paper

whedon commented 3 years ago

Software report (experimental):

github.com/AlDanial/cloc v 1.84  T=0.79 s (147.2 files/s, 32504.0 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
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JSON                             9              0              0          19589
JavaScript                      28             89             36           1755
Tcl/Tk                           2            272            269            882
Markdown                        23            286              0            589
HTML                            13              5              9            556
Python                           2             95             69            298
Dockerfile                       3             57             95            162
CSS                              6             24              0            144
Bourne Shell                    11             48             88            138
YAML                             3             16              3             84
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SVG                              2              0              0             13
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SUM:                           117            899            569          24359
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Statistical information for the repository '37291c3aee46d4a5da0e8d85' was
gathered on 2020/11/23.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
Patrick Avery                    4            63           1849           26.52
Reed                             1             1              1            0.03
Sebastien Jourdain              43          4709            582           73.38
reedmaxwell                      1             3              2            0.07

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
Patrick Avery                63          100.0          2.1                6.35
Sebastien Jourdain         2275           48.3          7.5                3.52
reedmaxwell                   4          133.3          1.9                0.00

whedon commented 3 years ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

labarba commented 3 years ago

hi @lecondon — thank you for your submission to JOSE. We've had the journal in a holding pattern since the pandemic hit, mainly because I became overwhelmed with pivoting online teaching, research, and JupyterCon (I was General Chair). Thank you for your patience. I am beginning to dig up from a long backlog, so you'll begin seeing some movement.

Could you help with some leads of people we might reach out to for a review of this work? Many thanks!

labarba commented 3 years ago

@marda-science has agreed to be the first reviewer for this submission—thank you!!

We'll be looking for a second reviewer, and then start the REVIEW issue, where all the action happens. Meanwhile, you could have a look at an old example review: you'll get a checklist as shown there to guide you in the review, and you'll be encouraged to open issues on the submission repository (adding a cross-link with the review). Feel free to start inspecting the submission in the target repository: https://github.com/hydroframe/SandTank

lecondon commented 3 years ago

Hi Lorena,

No worries about the timing. I’m clearly a bit behind too.

Are you still looking for a second reviewer? Here’s one name. I can come up with more too if you need.

Nick Engdahl nick.engdahl@wsu.edumailto:nick.engdahl@wsu.edu

Thanks,

Laura

— Laura E. Condon, PhD Assistant Professor Hydrology and Atmospheric Sciences University of Arizona, Tucson, AZ

On Nov 23, 2020, at 1:23 PM, Lorena A. Barba notifications@github.com<mailto:notifications@github.com> wrote:

External Email

hi @lecondonhttps://github.com/lecondon — thank you for your submission to JOSE. We've had the journal in a holding pattern since the pandemic hit, mainly because I became overwhelmed with pivoting online teaching, research, and JupyterCon (I was General Chair). Thank you for your patience. I am beginning to dig up from a long backlog, so you'll begin seeing some movement.

Could you help with some leads of people we might reach out to for a review of this work? Many thanks!

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/openjournals/jose-reviews/issues/92#issuecomment-732405345, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AC7I65ZPVO4SIIEJ2YQ2JADSRLAEHANCNFSM4T75ZD2Q.

labarba commented 3 years ago

@whedon assign @bryanwweber as editor

whedon commented 3 years ago

OK, the editor is @bryanwweber

bryanwweber commented 3 years ago

Thanks @labarba!

Hi @lecondon, I'll reach out to Nick and see if he's willing to review this work. Thanks again for your patience!

lecondon commented 3 years ago

Great thanks Bryan! Let me know if you need additional suggestions.

Laura

— Laura E. Condon, PhD Assistant Professor Hydrology and Atmospheric Sciences University of Arizona, Tucson, AZ

On Jan 5, 2021, at 7:23 AM, Bryan W. Weber notifications@github.com<mailto:notifications@github.com> wrote:

External Email

Thanks @labarbahttps://github.com/labarba!

Hi @lecondonhttps://github.com/lecondon, I'll reach out to Nick and see if he's willing to review this work. Thanks again for your patience!

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/openjournals/jose-reviews/issues/92#issuecomment-754665714, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AC7I655ATIWZM3DKZL5VXATSYMOF3ANCNFSM4T75ZD2Q.

bryanwweber commented 3 years ago

@lecondon Just to give an update, I haven't heard from Nick. I'll follow up, but if you have other suggestions I'd be glad to hear them!

labarba commented 3 years ago

@jsta 👋 — I have just sent you email, as well ... wondering if you could help us by contributing a review for this submission to JoSE: ParFlow Sand Tank: A tool for groundwater exploration https://github.com/openjournals/jose-reviews/issues/92

labarba commented 3 years ago

@marda-science – hi! 👋 You agreed to contribute a review for JOSE, the Journal of Open Source Education, a few months back. The process stalled as we have so far failed to find a second reviewer. Could you pop in the Pre-review issue on GitHub and drop us a line to say if you are still willing to review this submission?

Title: ParFlow Sand Tank: A tool for groundwater exploration View article proof on GitHub

labarba commented 3 years ago

@DamienIrving – hi! 👋 You have published with JOSE in the past, and I wonder if you would consider now contributing a review. We are in need of some help with this submission:

Title: ParFlow Sand Tank: A tool for groundwater exploration View article proof on GitHub

Thanks for considering it!

DamienIrving commented 3 years ago

Sorry, @labarba. Ordinarily I'd be happy to be a JOSE reviewer but this one is a bit far out of my area of expertise both in terms of the subject matter and the software packages involved.

bryanwweber commented 2 years ago

Hi @leouieda, you previously signed up to be a reviewer for JOSE, the Journal of Open Source Education. Would you please consider reviewing this submission? Thank you for your consideration!

Title: ParFlow Sand Tank: A tool for groundwater exploration View article proof on GitHub

leouieda commented 2 years ago

Hi @bryanwweber thank you for the invitation! I'm a bit hesitant to accept since my time is very limited at the moment and I'm not familiar with a majority of the software stack used and only tangentially aware of the subject matter. Under ideal conditions I would welcome the chance to learn more about docker and JS but I'm afraid that I would not have the time to invest at the moment. So my contribution may not be that useful and I would fear holding back the review process.

bryanwweber commented 2 years ago

Thanks for letting me know @leouieda!

labarba commented 2 years ago

@lecondon — @Bryan Weber has started a new job in Coiled and has decided to step down from the JOSE board, as he does not think that he will be able to carve out time to volunteer with us. We will be re-assigning this submission to a new editor soon. Thank you for your patience! 🙏

labarba commented 2 years ago

@JasonJWilliamsNY – We need a new editor to take over this submission: can you help?

JasonJWilliamsNY commented 2 years ago

@whedon assign @JasonJWilliamsNY as editor

whedon commented 2 years ago

OK, the editor is @JasonJWilliamsNY

JasonJWilliamsNY commented 2 years ago

@lecondon I'll follow up this week to see if we can get this off the ground. Thanks for your patience!

JasonJWilliamsNY commented 2 years ago

Sent via email as well:

Hello Dr. Condon,

I am a new(-ish) editor at the Journal for Open Source Education. I am on assignment to clear out submissions that had been unfortunately backlogged due to COVID. I wanted to reach out by email (can be hard to keep track of GitHub notifications) to confirm you’d like to continue publication of this with JOSE. If so, I wanted to see that the timing is right on your end as I recruit reviewers so that the process can be as smooth as possible once review begins.

Please let me know what you think and I can follow up.

Thanks,

Jason

JasonJWilliamsNY commented 2 years ago

Update: Reaching out to reviewers as per our discussion @lecondon

JasonJWilliamsNY commented 2 years ago

Update: Continuing to reach out to reviewers as per our discussion @lecondon

djlampert commented 2 years ago

I can try to review this, along with my student @bjrubinstein. I have a background in hydrologic models.

JasonJWilliamsNY commented 2 years ago

Thanks @djlampert @bjrubinstein I will move this to the next stage

JasonJWilliamsNY commented 2 years ago

@whedon add @djlampert as reviewer

whedon commented 2 years ago

OK, @djlampert is now a reviewer

JasonJWilliamsNY commented 2 years ago

@whedon add @bjrubinstein as reviewer

whedon commented 2 years ago

OK, @bjrubinstein is now a reviewer

JasonJWilliamsNY commented 2 years ago

@whedon start review

whedon commented 2 years ago

OK, I've started the review over in https://github.com/openjournals/jose-reviews/issues/179.

lecondon commented 2 years ago

HI Jason,

Thank you for your email. Yes to be honest we had pretty much given up on this. If it can proceed that’s great though. I will be on maternity leave after June 30th but I think my co-authors could probably handle the revisions.

Thanks,

Luara

From: Jason Williams @.> Date: Thursday, June 2, 2022 at 8:43 AM To: openjournals/jose-reviews @.> Cc: Condon, Laura - (lecondon) @.>, Mention @.> Subject: [EXT]Re: [openjournals/jose-reviews] [PRE REVIEW]: ParFlow Sand Tank: A tool for groundwater exploration (#92)

External Email

Sent via email as well:

Hello Dr. Condon,

I am a new(-ish) editor at the Journal for Open Source Education. I am on assignment to clear out submissions that had been unfortunately backlogged due to COVID. I wanted to reach out by email (can be hard to keep track of GitHub notifications) to confirm you’d like to continue publication of this with JOSE. If so, I wanted to see that the timing is right on your end as I recruit reviewers so that the process can be as smooth as possible once review begins.

Please let me know what you think and I can follow up.

Thanks,

Jason

— Reply to this email directly, view it on GitHubhttps://github.com/openjournals/jose-reviews/issues/92#issuecomment-1145012633, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AC7I653FM3ZRNVXBFO24ZL3VNDI73ANCNFSM4T75ZD2Q. You are receiving this because you were mentioned.Message ID: @.***>

openjournals / jose-reviews

[PRE REVIEW]: ParFlow Sand Tank: A tool for groundwater exploration #92