search

openjournals / joss-reviews

Reviews for the Journal of Open Source Software
Creative Commons Zero v1.0 Universal
696 stars 36 forks source link

[PRE REVIEW]: WGS2NCBI - Toolkit for preparing genomes for submission to NCBI #1353

Closed whedon closed 5 years ago

whedon commented 5 years ago

Submitting author: @rvosa (Rutger Vos) Repository: https://github.com/naturalis/wgs2ncbi Version: v1.0.0 Editor: @lpantano Reviewers: @druvus

Author instructions

Thanks for submitting your paper to JOSS @rvosa. Currently, there isn't an JOSS editor assigned to your paper.

@rvosa if you have any suggestions for potential reviewers then please mention them here in this thread. In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission.

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands
whedon commented 5 years ago

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@whedon commands

What happens now?

This submission is currently in a pre-review state which means we are waiting for an editor to be assigned and for them to find some reviewers for your submission. This may take anything between a few hours to a couple of weeks. Thanks for your patience :smile_cat:

You can help the editor by looking at this list of potential reviewers to identify individuals who might be able to review your submission (please start at the bottom of the list). Also, feel free to suggest individuals who are not on this list by mentioning their GitHub handles here.

whedon commented 5 years ago 
Attempting PDF compilation. Reticulating splines etc...
whedon commented 5 years ago

PDF failed to compile for issue #1353 with the following error:

/app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5469df74be0c/lib/whedon.rb:83:in check_fields': Paper YAML header is missing expected fields: affiliations (RuntimeError) from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5469df74be0c/lib/whedon.rb:69:ininitialize' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5469df74be0c/lib/whedon/processor.rb:32:in new' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5469df74be0c/lib/whedon/processor.rb:32:inset_paper' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5469df74be0c/bin/whedon:55:in prepare' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/command.rb:27:inrun' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in invoke_command' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor.rb:387:indispatch' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/base.rb:466:in start' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-5469df74be0c/bin/whedon:116:in<top (required)>' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in load' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in

'

danielskatz commented 5 years ago

@rvosa, please check your paper source, using https://joss.readthedocs.io/en/latest/submitting.html#example-paper-and-bibliography as an example/template. When you've made changes, enter @whedon generate pdf as a new comment here, and iterate until you are happy with the paper. Then we'll start the pre-review process by assigning an editor.

danielskatz commented 5 years ago

👋 bioinformatics editing team (@pjotrp @mgymrek @brainstorm @lpantano) - can one of you take on this submission as editor?

rvosa commented 5 years ago

@whedon generate pdf

whedon commented 5 years ago 
Attempting PDF compilation. Reticulating splines etc...
whedon commented 5 years ago

:point_right: Check article proof :page_facing_up: :point_left:

pjotrp commented 5 years ago

wave bioinformatics editing team (@pjotrp @mgymrek @brainstorm @lpantano) - can one of you take on this submission as editor?

We'll take it on. Thanks @rvosa for submitting this interesting tool!

danielskatz commented 5 years ago

👋 @pjotrp @mgymrek @brainstorm @lpantano - it would be great if whichever of you is willing to edit this would assign it yourself as editor :)

lpantano commented 5 years ago

@whedon assign @lpantano as editor

lpantano commented 5 years ago

@danielskatz @arfon I think whedon doesn't like me anymore ..... it doesn't assign me as editor, maybe I lost permissions :/

kyleniemeyer commented 5 years ago

@whedon assign @lpantano as editor

whedon commented 5 years ago

OK, the editor is @lpantano

kyleniemeyer commented 5 years ago

@lpantano weird! I had also been noticing some delays with whedon, maybe that was the issue.

arfon commented 5 years ago

@whedon list editors

whedon commented 5 years ago

Current editors:

@Kevin-Mattheus-Moerman
@VivianePons
@alexhanna
@arfon
@arokem
@brainstorm
@cMadan
@danielskatz
@eramirem
@gkthiruvathukal
@jasonclark
@jedbrown
@karthik
@katyhuff
@kthyng
@kyleniemeyer
@labarba
@leouieda
@lheagy
@lpantano
@mgymrek
@pjotrp
@poulson
@trallard
@usethedata
@xuanxu
@yochannah
ooo[bot] commented 5 years ago

:wave: Hey @whedon...

Letting you know, @trallard is currently OOO until Sunday, April 7th 2019. :heart:

arfon commented 5 years ago

@danielskatz @arfon I think whedon doesn't like me anymore ..... it doesn't assign me as editor, maybe I lost permissions :/

Hrm, not sure what's up here.

lpantano commented 5 years ago

@whedon assign @druvus as reviewer

whedon commented 5 years ago

OK, the reviewer is @druvus

lpantano commented 5 years ago

@whedon start review

whedon commented 5 years ago

OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/1364. Feel free to close this issue now!