Closed whedon closed 4 years ago
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Attempting PDF compilation. Reticulating splines etc...
Failed to discover a valid open source license.
PDF failed to compile for issue #1772 with the following error:
Could not find bibliography file: simode.bib Error running filter pandoc-citeproc: Filter returned error status 1 Looks like we failed to compile the PDF
@ramiyaari - I see some high-level issues here:
Please see https://joss.readthedocs.io/en/latest/submitting.html#typical-paper-submission-flow
Also, in your paper, you say the bib is "bibliography: simode.bib" but it's actually "paper.bib" - please fix this, then enter @whedon generate pdf
as a new comment in this issue to recompile.
@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
PDF failed to compile for issue #1772 with the following error:
Error producing PDF. ! LaTeX Error: Bad math environment delimiter.
See the LaTeX manual or LaTeX Companion for explanation.
Type H
l.466 \begin{equation}
Looks like we failed to compile the PDF
@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
PDF failed to compile for issue #1772 with the following error:
Error producing PDF. ! Missing \endgroup inserted.
@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
@whedon generate pdf
Attempting PDF compilation. Reticulating splines etc...
@danielskatz thanks for your comments I believe I fixed all these issues
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Please update the software version to 1.1.6 Suggested Reviewers: Jgoldfar, trashbirdecology, MikeLydeamore, MaaniBeigy, llauriciu, matloff, ellessenne, osorensen, RomainAzais
@whedon set v1.1.6 as version
OK. v1.1.6 is the version.
I still don't see a readme or a license in the source repo.
There is a README.txt and a LICENSE.txt file under inst/joss in the repo, together with paper.md
@danielskatz: There is a README.txt and a LICENSE.txt file under inst/joss in the repo, together with paper.md
These need to be at the top level of the repo
OK, fixed it
👋 @mjsottile — Could you handle this submission as editor? simode: R Package for Statistical Inference of Ordinary Differential Equations using Separable Integral-Matching Repository: https://github.com/ramiyaari/simode/
Yes, I can take this submission as editor.
@whedon assign @mjsottile as editor
OK, the editor is @mjsottile
👋@cscherrer would you be interested in reviewing this paper?
@whedon add @cscherrer as reviewer
OK, @cscherrer is now a reviewer
@whedon assign @cscherrer as reviewer
OK, the reviewer is @cscherrer
Other possible reviewers from the spreadsheet: @jgoldfar - you appear to have knowledge of differential equations and R. @fabian-s - you appear to have knowledge of R and inference methods. Interested in taking this on to help review?
I would be able to take this on at the beginning of November; I'd be happy to help if there is still a need for review.
On Oct 16, 2019, at 12:09 AM, Matthew Sottile notifications@github.com wrote:
Other possible reviewers from the spreadsheet: @jgoldfar https://github.com/jgoldfar - you appear to have knowledge of differential equations and R. @fabian-s https://github.com/fabian-s - you appear to have knowledge of R and inference methods. Interested in taking this on to help review?
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/1772?email_source=notifications&email_token=ABKORGJBHNLI3VV2BR544G3QO2HY7A5CNFSM4I3SPZ5KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEBK7HSA#issuecomment-542503880, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABKORGL2H4XEZAAD5Y3IJTDQO2HY7ANCNFSM4I3SPZ5A.
Thanks @jgoldfar. That timeline should be fine in November.
@whedon add @jgoldfar as reviewer
OK, @jgoldfar is now a reviewer
Hi, @trashbirdecology, @MikeLydeamore, @MaaniBeigy, @llauriciu, @matloff, @ellessenne, @osorensen, @RomainAzais - you were suggested as potential reviewers for this JOSS submission. Let me know if you're interested in reviewing this submission. I am looking for at least one reviewer to add before I start the review process.
Yes, I am interested.
Yes, I am interested.
Yes, I am interested
On Wed, 30 Oct 2019, 07:33 Øystein Sørensen, notifications@github.com wrote:
Yes, I am interested.
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/1772?email_source=notifications&email_token=AI6QPJQF3GOSJPYQO62VO5LQREBQXA5CNFSM4I3SPZ5KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOECS3GGY#issuecomment-547730203, or unsubscribe https://github.com/notifications/unsubscribe-auth/AI6QPJQIJE2CV5K4PA43QOTQREBQXANCNFSM4I3SPZ5A .
Thanks @osorensen - I'll add you. @MaaniBeigy , I will hold off adding you unless we need an additional reviewer during the process.
Submitting author: @ramiyaari (Rami Yaari) Repository: https://github.com/ramiyaari/simode/ Version: v1.1.6 Editor: @mjsottile Reviewers: @cscherrer, @jgoldfar, @osorensen
Author instructions
Thanks for submitting your paper to JOSS @ramiyaari. Currently, there isn't an JOSS editor assigned to your paper.
@ramiyaari if you have any suggestions for potential reviewers then please mention them here in this thread. In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission.
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