Closed whedon closed 4 years ago
Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.
:warning: JOSS reduced service mode :warning:
Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.
For a list of things I can do to help you, just type:
@whedon commands
For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:
@whedon generate pdf
Software report (experimental):
github.com/AlDanial/cloc v 1.84 T=0.35 s (282.8 files/s, 110132.9 lines/s)
-------------------------------------------------------------------------------
Language files blank comment code
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JavaScript 11 2201 2239 8337
TeX 1 558 0 5304
Cython 20 1441 1617 4963
HTML 15 1751 15 3304
SVG 1 0 0 2671
Python 13 221 151 831
CSS 4 165 34 645
Jupyter Notebook 10 0 1037 426
Markdown 6 85 0 190
reStructuredText 12 64 57 76
YAML 3 12 5 56
make 2 14 8 41
DOS Batch 1 8 1 26
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SUM: 99 6520 5164 26870
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Statistical information for the repository '2299' was gathered on 2020/06/07.
The following historical commit information, by author, was found:
Author Commits Insertions Deletions % of changes
Rajesh Singh 63 420260 406280 100.00
Below are the number of rows from each author that have survived and are still
intact in the current revision:
Author Rows Stability Age % in comments
Rajesh Singh 13980 3.3 0.5 16.87
PDF failed to compile for issue #2299 with the following error:
[WARNING] Could not convert image '/tmp/tex2pdf.-4e06424784e541bb/6d52616db8c85286870de3cf0a4c8d54044a4fd0.svg': check that rsvg-convert is in path. rsvg-convert: createProcess: runInteractiveProcess: exec: does not exist (No such file or directory) Error producing PDF. ! LaTeX Error: Cannot determine size of graphic in /tmp/tex2pdf.-4e06424784e541 bb/6d52616db8c85286870de3cf0a4c8d54044a4fd0.svg (no BoundingBox).
See the LaTeX manual or LaTeX Companion for explanation.
Type H
l.408 ...16db8c85286870de3cf0a4c8d54044a4fd0.svg}}
Looks like we failed to compile the PDF
đź‘‹ @rajeshrinet - Thanks for your submission to JOSS. As described in our blog post announcing the reopening of JOSS, we're currently working in a "reduced service mode", limiting the number of papers assigned to any individual editor.
Since reopening JOSS we've had > 60 papers submitted and as such, yours has been put in our backlog that we will be working through over the coming weeks and months.
Thanks in advance for your patience!
@rajeshrinet regarding the paper build error, I think the issue is the SVG badge you are trying to include. Can you remove, or convert to a PNG (for example)?
Reference check summary:
OK DOIs
- 10.1017/CBO9780511813467 is OK
- 10.1007/978-3-319-12787-3 is OK
- 10.1002/cite.330641004 is OK
- 10.1007/978-3-540-87706-6_2 is OK
- 10.1007/978-3-540-72308-0 is OK
- 10.1017/CBO9780511624124 is OK
- 10.1137/1.9780898718003.bm is OK
- 10.1002/bbpc.197800142 is OK
- 10.1007/978-3-642-61544-3 is OK
- 10.1017/CBO9780511608810 is OK
- 10.1007/978-1-4757-6639-4_11 is OK
- 10.1002/cpa.3160050201 is OK
- 10.1002/andp.19053220806 is OK
- 10.1063/1.864051 is OK
- 10.1021/la00050a035 is OK
- 10.1146/annurev.fl.21.010189.000425 is OK
- 10.1103/PhysRevLett.82.1590 is OK
- 10.1002/adma.200501767 is OK
- 10.1039/B414896G is OK
- 10.1002/smll.200400061 is OK
- 10.1039/B505092H is OK
- 10.1021/ja047697z is OK
- 10.1103/PhysRevLett.92.118101 is OK
- 10.1063/1.3122346 is OK
- 10.1103/PhysRevLett.89.058101 is OK
- 10.1016/S0378-4371(02)00503-4 is OK
- 10.1103/PhysRevLett.100.178103 is OK
- 10.1063/1.3041776 is OK
- 10.1002/smll.201000415 is OK
- 10.1126/science.1203963 is OK
- 10.1103/PhysRevLett.104.258101 is OK
- 10.1103/PhysRevE.77.026709 is OK
- 10.1007/s00348-007-0387-y is OK
- 10.1017/S0022112075000614 is OK
- 10.1017/S0022112076000475 is OK
- 10.1103/PhysRevLett.94.148104 is OK
- 10.1063/1.868116 is OK
- 10.1103/PhysRevE.82.016309 is OK
- 10.1103/PhysRevE.76.051905 is OK
- 10.1016/j.jcp.2003.10.017 is OK
- 10.1103/PhysRevLett.87.198301 is OK
- 10.1073/pnas.0900451106 is OK
- 10.1017/S0022112059000222 is OK
- 10.1063/1.1613939 is OK
- 10.1038/38532 is OK
- 10.1103/PhysRevE.78.036704 is OK
- 10.1063/1.3251771 is OK
- 10.1063/1.480156 is OK
- 10.1016/0370-1573(92)90090-M is OK
- 10.1146/annurev-fluid-121108-145519 is OK
- 10.1073/pnas.1200843109 is OK
- 10.1007/s12551-011-0046-7 is OK
- 10.1016/0065-227X(91)90022-6 is OK
- 10.1016/S0006-3495(98)74062-7 is OK
- 10.1080/01411599308223720 is OK
- 10.1073/pnas.251530598 is OK
- 10.1073/pnas.96.25.14306 is OK
- 10.1146/annurev.mi.19.100165.000321 is OK
- 10.1016/S0959-4388(97)80026-8 is OK
- 10.1126/science.1173869 is OK
- 10.1126/science.175.4019.337 is OK
- 10.1242/jeb.02131 is OK
- 10.1063/1.2751388 is OK
- 10.1146/annurev.fluid.37.061903.175725 is OK
- 10.1063/PT.3.1715 is OK
- 10.1063/1.474784 is OK
- 10.1063/1.436761 is OK
- 10.1063/1.1564047 is OK
- 10.1146/annurev.ph.58.030196.003415 is OK
- 10.1103/PhysRevE.80.036704 is OK
- 10.1017/S002211207100048X is OK
- 10.1017/S0022112071002027 is OK
- 10.1017/S0305004100049902 is OK
- 10.1017/S0022112072001612 is OK
- 10.1016/0021-9290(75)90023-8 is OK
- 10.1146/annurev.fl.09.010177.002011 is OK
- 10.1039/c1sm90014e is OK
- 10.1146/annurev-conmatphys-070909-104101 is OK
- 10.1146/annurev.fluid.30.1.329 is OK
- 10.1103/PhysRevE.47.1815 is OK
- 10.1103/PhysRevE.49.2941 is OK
- 10.1103/PhysRevE.64.031203 is OK
- 10.1088/0034-4885/72/9/096601 is OK
- 10.1083/jcb.39.1.77 is OK
- 10.1085/jgp.50.6.241 is OK
- 10.1006/jtbi.2000.2182 is OK
- 10.1146/annurev.biochem.72.121801.161737 is OK
- 10.1016/S0006-3495(78)85431-9 is OK
- 10.1126/science.178.4060.455 is OK
- 10.1063/1.3318497 is OK
- 10.1002/cm.20313 is OK
- 10.1017/S0022112080002716 is OK
- 10.1017/S0022112079002482 is OK
- 10.1017/S002211207900104X is OK
- 10.1017/S0022112079001051 is OK
- 10.1038/nature11591 is OK
- 10.1063/1.882934 is OK
- 10.1038/245380a0 is OK
- 10.1119/1.10903 is OK
- 10.1143/JPSJ.35.866 is OK
- 10.1063/1.1324710 is OK
- 10.1103/PhysRevLett.105.168101 is OK
- 10.1103/PhysRevLett.107.014501 is OK
- 10.1021/nl070190c is OK
- 10.1038/nature04090 is OK
- 10.1103/PhysRevLett.77.4102 is OK
- 10.1016/0378-4371(76)90104-7 is OK
- 10.1016/0378-4371(77)90111-X is OK
- 10.1063/1.1742462 is OK
- 10.1063/1.454658 is OK
- 10.1016/0378-4371(82)90127-3 is OK
- 10.1016/0378-4371(83)90061-4 is OK
- 10.1103/PhysRevB.2.1091 is OK
- 10.1063/1.433207 is OK
- 10.1080/00018737800101454 is OK
- 10.1016/j.crhy.2013.04.001 is OK
- 10.1017/S0022112006002631 is OK
- 10.1002/cpa.3160050201 is OK
- 10.1103/PhysRevLett.105.168102 is OK
- 10.1063/1.1697123 is OK
- 10.1103/PhysRevA.25.2647 is OK
- 10.1016/0009-2509(64)85084-3 is OK
- 10.1016/0009-2509(64)85084-3 is OK
- 10.1098/rspa.1969.0071 is OK
- 10.1103/PhysRevLett.102.168101 is OK
- 10.1103/PhysRevE.83.061403 is OK
- 10.1146/annurev-fluid-121108-145434 is OK
- 10.1073/pnas.1019079108 is OK
- 10.1038/srep01964 is OK
- 10.1103/RevModPhys.85.1143 is OK
- 10.1063/1.1730220 is OK
- 10.1063/1.4812822 is OK
- 10.1098/rspa.1922.0078 is OK
- 10.1007/BF01590660 is OK
- 10.1063/1.1670977 is OK
- 10.1103/PhysRevLett.92.078101 is OK
- 10.1140/epje/e2005-00002-5 is OK
- 10.1016/j.physrep.2007.02.018 is OK
- 10.1088/1367-2630/9/11/422 is OK
- 10.1017/S0022112082000627 is OK
- 10.1063/1.2803837 is OK
- 10.1063/1.451199 is OK
- 10.1103/PhysRevLett.112.118102 is OK
- 10.1007/BF00118824 is OK
- 10.1016/0021-9797(82)90127-8 is OK
- 10.1017/S0022112079000021 is OK
- 10.1017/S0022112088002411 is OK
- 10.1017/S0022112070000745 is OK
- 10.1103/PhysRevLett.109.158302 is OK
- 10.1103/PhysRevLett.108.268303 is OK
- 10.1103/PhysRevLett.109.168105 is OK
- 10.1007/BF01517501 is OK
- 10.1126/science.1230020 is OK
- 10.1007/BF01194638 is OK
- 10.1007/BF00253328 is OK
- 10.1017/S0022112075001486 is OK
- 10.1002/andp.18792430702 is OK
- 10.1016/0378-4371(80)90067-9 is OK
- 10.1016/0378-4371(82)90007-3 is OK
- 10.1016/0378-4371(82)90236-9 is OK
- 10.1002/aic.690340704 is OK
- 10.1017/S002211208700171X is OK
- 10.1063/1.466366 is OK
- 10.1017/S0022112084001105 is OK
- 10.1017/S0022112001006735 is OK
- 10.1039/C6SM02104B is OK
- 10.1017/S0022112095003260 is OK
- 10.1063/1.1746947 is OK
- 10.1137/0147047 is OK
- 10.1140/epje/i2006-10009-1 is OK
- 10.1103/PhysRevLett.75.1226 is OK
- 10.1103/PhysRevLett.92.025702 is OK
- 10.1088/0034-4885/75/4/042601 is OK
- 10.1103/PhysRevLett.75.4326 is OK
- 10.1103/PhysRevLett.112.238104 is OK
- 10.1209/epl/i2006-10201-y is OK
- 10.1073/pnas.0906586106 is OK
- 10.1103/PhysRevLett.100.088103 is OK
- 10.1017/S0022112008003807 is OK
- 10.1103/PhysRevLett.100.218103 is OK
- 10.1021/la8038335 is OK
- 10.1103/PhysRevLett.114.158102 is OK
- 10.1103/PhysRevLett.101.168301 is OK
- 10.1063/1.1674820 is OK
- 10.1103/PhysRevE.74.041127 is OK
- 10.1088/2399-6528/aaab0d is OK
- 10.1103/PhysRevE.98.012136 is OK
- 10.1103/PhysRevLett.117.228002 is OK
- 10.1063/1.1678535 is OK
- 10.1146/annurev.fl.13.010181.002233 is OK
- 10.1146/annurev-fluid-010313-141426 is OK
- 10.1103/PhysRevLett.105.088304 is OK
- 10.1126/science.272.5262.706 is OK
- 10.1021/la970294a is OK
- 10.1146/annurev-conmatphys-031214-014710 is OK
- 10.1103/PhysRevE.84.040301 is OK
- 10.1103/PhysRevLett.108.235702 is OK
- 10.1103/PhysRevLett.108.168301 is OK
- 10.1103/PhysRevLett.110.055701 is OK
- 10.1073/pnas.1001994107 is OK
- 10.1039/C5SM02021B is OK
- 10.1021/acs.accounts.5b00025 is OK
- 10.1039/C5SM03127C is OK
- 10.1103/PhysRevLett.83.1239 is OK
- 10.1016/0021-9797(79)90336-9 is OK
- 10.1103/PhysRevE.90.032304 is OK
- 10.1093/imamat/hxw030 is OK
- 10.1103/PhysRevLett.99.048102 is OK
- 10.1039/B918598D is OK
- 10.1103/PhysRevLett.105.268302 is OK
- 10.1039/C6SM01163B is OK
- 10.1139/p85-003 is OK
- 10.1017/S0022112007007835 is OK
- 10.1016/0378-4371(94)90170-8 is OK
- 10.1007/s10665-014-9690-9 is OK
- 10.1063/1.4954918 is OK
- 10.1039/C4SM00340C is OK
- 10.1103/PhysRevLett.117.038103 is OK
- 10.1017/jfm.2011.132 is OK
- 10.1016/j.jcp.2007.04.033 is OK
- 10.1006/jcph.1997.5706 is OK
- 10.1063/1.1331320 is OK
- 10.1016/j.jcp.2015.09.020 is OK
- 10.1063/1.4944962 is OK
- 10.1103/PhysRevE.88.012301 is OK
- 10.1103/PhysRevLett.94.220801 is OK
- 10.1017/S0022112001005912 is OK
- 10.1038/324446a0 is OK
- 10.1063/1.869003 is OK
- 10.1063/1.868228 is OK
- 10.1017/S0022112094001771 is OK
- 10.1017/S0022112094001783 is OK
- 10.1103/PhysRevLett.41.121 is OK
- 10.1103/PhysRevB.19.2457 is OK
- 10.1103/PhysRevB.19.1855 is OK
- 10.1021/acs.iecr.5b01552 is OK
- 10.1017/S0022112077001062 is OK
- 10.1103/PhysRevLett.114.188301 is OK
- 10.1063/1.1680110 is OK
- 10.1063/1.1681177 is OK
- 10.1063/1.431957 is OK
- 10.1088/0305-4470/11/5/022 is OK
- 10.1063/1.443971 is OK
- 10.1017/S0022112001005432 is OK
- 10.1002/andp.19223731003 is OK
- 10.1063/1.1693183 is OK
- 10.1007/BF01030307 is OK
- 10.1016/0031-8914(74)90198-0 is OK
- 10.1103/RevModPhys.21.383 is OK
- 10.1103/RevModPhys.15.1 is OK
- 10.1080/00319108008084770 is OK
- 10.1016/0378-4371(90)90142-F is OK
- 10.1070/PU1994v037n08ABEH000038 is OK
- 10.1103/PhysRevA.29.2814 is OK
- 10.1016/0378-4371(92)90330-S is OK
- 10.1080/14786440509463331 is OK
- 10.1146/annurev.fl.04.010172.000521 is OK
- 10.1063/1.1724117 is OK
- 10.1002/9780470143605.ch17 is OK
- 10.1017/S0022112076001663 is OK
- 10.1017/S0004972700008819 is OK
- 10.1080/00268978600102291 is OK
- 10.1103/PhysRevLett.98.158102 is OK
- 10.1017/jfm.2015.269 is OK
- 10.1017/jfm.2016.479 is OK
- 10.1103/PhysRevLett.110.198302 is OK
- 10.1039/C4SM02317J is OK
- 10.1103/PhysRevE.92.063027 is OK
- 10.1021/ma00158a043 is OK
- 10.1063/1.4742347 is OK
- 10.1038/srep41638 is OK
- 10.1007/BF01535565 is OK
- 10.1063/1.1568341 is OK
- 10.1103/PhysRevLett.101.038102 is OK
- 10.1017/jfm.2012.101 is OK
- 10.1103/PhysRevE.84.041932 is OK
- 10.1103/PhysRevE.76.011123 is OK
- 10.1103/PhysRevLett.104.170602 is OK
- 10.1103/PhysRevLett.107.078901 is OK
- 10.1017/jfm.2013.402 is OK
- 10.1007/BF01011764 is OK
- 10.1007/BF01007642 is OK
- 10.1016/0378-4371(90)90144-H is OK
- 10.1109/MCSE.2010.118 is OK
- 10.1080/00018730110050617 is OK
- 10.1146/annurev.fl.01.010169.000551 is OK
- 10.1007/BF00995128 is OK
- 10.1016/j.enganabound.2004.12.001 is OK
- 10.1017/S0022112072001399 is OK
- 10.1039/C4SM00550C is OK
- 10.1021/acs.jpcc.8b04169 is OK
- 10.1073/pnas.1718807115 is OK
- 10.1126/science.1097964 is OK
- 10.1007/BF01016797 is OK
- 10.1002/9780470143810.ch5 is OK
- 10.1021/acs.chemrev.6b00045 is OK
- 10.1016/0021-9991(77)90100-0 is OK
- 10.1088/0034-4885/75/12/126001 is OK
- 10.1103/RevModPhys.83.587 is OK
- 10.1063/1.4972010 is OK
- 10.1017/S0022112059000684 is OK
- 10.1016/S0301-9322(01)00014-3 is OK
- 10.1002/sapm1973522115 is OK
- /10.1063/1.861651 is OK
- 10.1017/S0022112071003045 is OK
- 10.1016/S0001-8686(00)00070-1 is OK
- 10.1103/PhysRevLett.119.028001 is OK
- 10.1016/j.physrep.2009.05.002 is OK
- 10.1103/RevModPhys.65.851 is OK
- 10.1021/acsnano.7b04265 is OK
- 10.1017/S0022112010003964 is OK
- 10.1017/S0022112092001824 is OK
- 10.1039/C7CS00461C is OK
- 10.1038/35059035 is OK
- 10.1126/science.1253751 is OK
- 10.1103/PhysRevLett.118.268001 is OK
- 10.1103/PhysRevLett.111.245702 is OK
- 10.1103/PhysRevLett.110.238301 is OK
- 10.1103/PhysRevLett.115.258301 is OK
- 10.1103/PhysRevLett.112.238303 is OK
- 10.1038/nphys3970 is OK
- 10.1103/PhysRevE.89.062316 is OK
- 10.1103/PhysRevX.5.011035 is OK
- 10.1007/BF02183736 is OK
- 10.1070/RM1970v025n01ABEH001254 is OK
- 10.1063/1.2720838 is OK
- 10.1103/PhysRevB.66.052301 is OK
- 10.1039/C8SM00194D is OK
- 10.1021/acs.langmuir.8b00310 is OK
- 10.1016/j.physd.2012.06.005 is OK
- 10.1103/PhysRevLett.112.068301 is OK
- 10.1039/C6SM01867J is OK
- 10.1063/1.4963722 is OK
- 10.1088/0034-4885/73/12/126601 is OK
- 10.1140/epje/i2018-11753-1 is OK
- 10.1063/1.5065656 is OK
- 10.1063/1.5090179 is OK
- 10.1137/S0036144500378302 is OK
- 10.1145/365723.365727 is OK
MISSING DOIs
- https://doi.org/10.1007/3-540-27223-2_1 may be missing for title: Fluid mechanics
- https://doi.org/10.1109/tit.2004.834752 may be missing for title: Information theory, inference and learning algorithms
- https://doi.org/10.1038/086105a0 may be missing for title: Brownian movement and molecular reality
- https://doi.org/10.2307/3613759 may be missing for title: The mathematical theory of viscous incompressible flow
- https://doi.org/10.1002/9780470241066.ch2 may be missing for title: Hydrodynamics
- https://doi.org/10.1016/0032-3861(81)90183-x may be missing for title: Scaling concepts in polymer physics
- https://doi.org/10.1016/0021-8502(75)90096-8 may be missing for title: Low Reynolds number hydrodynamics: with special applications to particulate media
- https://doi.org/10.1007/978-94-011-0195-0_9 may be missing for title: On the Motion of Small Particles of Elongated Form. Suspended in a Viscous Liquid
- https://doi.org/10.1201/9781315120195-1 may be missing for title: Introduction to Numerical Analysis
- https://doi.org/10.1007/978-3-540-39895-0_9 may be missing for title: Lattice Boltzmann modeling of complex fluids: Colloidal suspensions and fluid mixtures
- https://doi.org/10.1016/0021-9797(81)90146-6 may be missing for title: Concentration dependence of electrophoretic mobility
- https://doi.org/10.1016/0301-9322(85)90026-6 may be missing for title: Droplet interactions in thermocapillary motion
- https://doi.org/10.1201/9781351069397-24 may be missing for title: Methods of conjugate gradients for solving linear systems
- https://doi.org/10.1006/jsvi.1999.2257 may be missing for title: Dynamics of transversely vibrating beams using four engineering theories
- https://doi.org/10.1007/bf02025577 may be missing for title: Die Knicklast des einseitig eingespannten, tangential gedrĂĽckten Stabes
- https://doi.org/10.1523/jneurosci.23-11-04533.2003 may be missing for title: Spontaneous oscillation by hair bundles of the bullfrog’s sacculus
- https://doi.org/10.1016/s0006-3495(92)81683-1 may be missing for title: Ciliary motion modeling, and dynamic multicilia interactions.
- https://doi.org/10.1006/jtbi.1994.1097 may be missing for title: A "Geometric Clutch" Hypothesis to Explain Oscillations of the Axoneme of Cilia and Flagella
- https://doi.org/10.1016/j.bpj.2008.12.1051 may be missing for title: How molecular motors shape the flagellar beat.
- https://doi.org/10.1073/pnas.68.12.3092 may be missing for title: Adenosine triphosphate-induced sliding of tubules in trypsin-treated flagella of sea-urchin sperm
- https://doi.org/10.1103/physrevlett.94.148104 may be missing for title: Hydrodynamic induced deformation and orientation of a microscopic elastic filament
- https://doi.org/10.1215/ijm/1258138354 may be missing for title: Symmetry of a boundary integral operator and a characterization of a ball
- https://doi.org/10.1080/00018737800101454 may be missing for title: The description of the physical properties of condensed matter using irreducible tensors
- https://doi.org/10.1146/annurev.fl.24.010192.001525 may be missing for title: Hydrodynamic phenomena in suspensions of swimming microorganisms
- https://doi.org/10.1017/s0022112006001066 may be missing for title: Antisymmetric stresses in suspensions: Vortex viscosity and energy dissipation
- https://doi.org/10.1103/physreve.83.011907 may be missing for title: Nonlinear rheology of active particle suspensions: Insights from an analytical approach
- https://doi.org/10.1016/s0378-4371(02)01145-7 may be missing for title: Complex fluid behavior: coupling of the shear stress with order parameter tensors of ranks two and three in nematic liquid crystals and in tetradic fluids
- https://doi.org/10.1007/978-94-009-0225-1_10 may be missing for title: The Lorentz reciprocal theorem for micropolar fluids
- https://doi.org/10.1146/annurev.fl.12.010180.002003 may be missing for title: Stokeslets and eddies in creeping flow
- https://doi.org/10.1090/qam/872829 may be missing for title: On spherical inversions of polyharmonic functions
- https://doi.org/10.1017/s0022112075002698 may be missing for title: Constitutive equations in suspension mechanics. Part 1. General formulation
- https://doi.org/10.1017/s0022112076003200 may be missing for title: Constitutive equations in suspension mechanics. Part 2. Approximate forms for a suspension of rigid particles affected by Brownian rotations
- https://doi.org/10.1016/0377-0257(82)85016-7 may be missing for title: A simple constitutive equation for polymer fluids based on the concept of deformation-dependent tensorial mobility
- https://doi.org/10.1016/0010-4655(95)00029-f may be missing for title: HYDROLIB: a library for the evaluation of hydrodynamic interactions in colloidal suspensions
- https://doi.org/10.29172/44a16592-4eaa-402d-a24c-41399258fbd4 may be missing for title: Stokesian dynamics
- https://doi.org/10.1017/s0022112077001414 may be missing for title: An averaged-equation approach to particle interactions in a fluid suspension
- https://doi.org/10.1098/rspa.1922.0078 may be missing for title: The motion of ellipsoidal particles immersed in a viscous fluid
- https://doi.org/10.1260/175683109788707463 may be missing for title: A note on the kinematics of rigid molecules in linear flow fields and kinetic theory for biaxial liquid crystal polymers
- https://doi.org/10.1038/nature11591 may be missing for title: Spontaneous motion in hierarchically assembled active matter
- https://doi.org/10.1016/0378-4371(88)90036-2 may be missing for title: Many-body hydrodynamic interactions in suspensions
- https://doi.org/10.1017/s0022112079002482 may be missing for title: A hydrodynamic analysis of flagellar propulsion
- https://doi.org/10.1017/s002211207900104x may be missing for title: The generation of feeding currents by flagellar motions
- https://doi.org/10.1007/bf01590660 may be missing for title: Faxén relations of arbitrary order and their application
- https://doi.org/10.1515/zna-1968-0801 may be missing for title: Coupled Translational and Rotational Motions of a Sphere in a Fluid
- https://doi.org/10.1002/zamm.19850650102 may be missing for title: The time dependent deformation of a capsule in an arbitrary Stokes flow
- https://doi.org/10.1021/la500182f may be missing for title: Selecting the Swimming Mechanisms of Colloidal Particles: Bubble Propulsion versus Self-Diffusiophoresis
- https://doi.org/10.1016/j.nantod.2013.08.009 may be missing for title: Small power: Autonomous nano-and micromotors propelled by self-generated gradients
- https://doi.org/10.1002/aic.690340704 may be missing for title: Electrophoresis in a dilute dispersion of colloidal spheres
- https://doi.org/10.1016/0017-9310(83)90051-0 may be missing for title: Heat conduction through periodic arrays of spheres
- https://doi.org/10.1016/0021-9797(70)90171-2 may be missing for title: Electrophoresis of a particle of arbitrary shape
- https://doi.org/10.1017/s0022112001004682 may be missing for title: Inertial effects in three-dimensional spinodal decomposition of a symmetric binary fluid mixture: a lattice Boltzmann study
- https://doi.org/10.1103/physreve.58.4828 may be missing for title: Flocks, herds, and schools: A quantitative theory of flocking
- https://doi.org/10.1016/0009-2509(95)00181-4 may be missing for title: Particle interactions in thermophoresis
- https://doi.org/10.1017/jfm.2015.372 may be missing for title: Transport of a dilute active suspension in pressure-driven channel flow
- https://doi.org/10.1209/0295-5075/86/60002 may be missing for title: Sedimentation, trapping, and rectification of dilute bacteria
- https://doi.org/10.1088/1742-5468/2015/06/p06017 may be missing for title: Many-body microhydrodynamics of colloidal particles with active boundary layers
- https://doi.org/10.1103/physreve.89.022301 may be missing for title: Active crystals and their stability
- https://doi.org/10.1103/physrevlett.110.055702 may be missing for title: Traveling and resting crystals in active systems
- https://doi.org/10.1126/science.aac6103 may be missing for title: Transient assembly of active materials fueled by a chemical reaction
- https://doi.org/10.1126/science.1110329 may be missing for title: A self-organized vortex array of hydrodynamically entrained sperm cells
- https://doi.org/10.1080/17797179.2017.1294829 may be missing for title: Fluctuating hydrodynamics and the Brownian motion of an active colloid near a wall
- https://doi.org/10.1209/0295-5075/101/20010 may be missing for title: When are active Brownian particles and run-and-tumble particles equivalent? Consequences for motility-induced phase separation
- https://doi.org/10.1088/1367-2630/13/7/073021 may be missing for title: Swarming behavior of simple model squirmers
- https://doi.org/10.1063/1.4869328 may be missing for title: Role of solution conductivity in reaction induced charge auto-electrophoresis
- https://doi.org/10.1017/s0022112084000355 may be missing for title: Calculation of the resistance and mobility functions for two unequal rigid spheres in low-Reynolds-number flow
- https://doi.org/10.1088/0305-4470/22/20/011 may be missing for title: Traceless Cartesian tensor forms for spherical harmonic functions: new theorems and applications to electrostatics of dielectric media
- https://doi.org/10.1103/physrevlett.70.3580 may be missing for title: Hydrodynamic theory of electromagnetic fields in continuous media
- https://doi.org/10.4324/9780429494116-24 may be missing for title: Ordering, metastability and phase transitions in two-dimensional systems
- https://doi.org/10.1063/1.472355 may be missing for title: Spinodal decomposition of colloids in the initial and intermediate stages
- https://doi.org/10.1088/1367-2630/9/5/126 may be missing for title: Designing phoretic micro-and nano-swimmers
- https://doi.org/10.1103/physrev.91.1505 may be missing for title: Fluctuations and irreversible processes
- https://doi.org/10.1063/1.1740082 may be missing for title: Markoff Random Processes and the Statistical Mechanics of Time-Dependent Phenomena. II. Irreversible Processes in Fluids
- https://doi.org/10.1103/physrev.131.2381 may be missing for title: Dynamical study of Brownian motion
- https://doi.org/10.1103/physreva.3.1394 may be missing for title: Velocity fluctuations of a hard-core Brownian particle
- https://doi.org/10.1103/physreva.2.2005 may be missing for title: Hydrodynamic theory of the velocity correlation function
- https://doi.org/10.1016/0031-8914(64)90102-8 may be missing for title: On the identity of three generalized master equations
- https://doi.org/10.6028/jres.068b.019 may be missing for title: Hydrodynamic fluctuations and Stokes law friction
- https://doi.org/10.1103/physrev.38.2265 may be missing for title: Reciprocal relations in irreversible processes. II.
- https://doi.org/10.1103/revmodphys.17.343 may be missing for title: On Onsager’s principle of microscopic reversibility
- https://doi.org/10.1007/bf01024130 may be missing for title: On the theory of Brownian motion. III. Two-body distribution function
- https://doi.org/10.1063/1.1693717 may be missing for title: Diffusion Equation for a Pair of Brownian Particles
- https://doi.org/10.1063/1.1675379 may be missing for title: Molecular theory of Brownian motion for several particles
- https://doi.org/10.1063/1.1677653 may be missing for title: Effect of inertia on the Brownian motion of rigid particles in a viscous fluid
- https://doi.org/10.1209/0295-5075/111/54002 may be missing for title: Dynamic clustering in suspension of motile bacteria
- https://doi.org/10.1016/s0065-2156(08)70330-2 may be missing for title: Variational and related methods for the overall properties of composites
- https://doi.org/10.1093/qjmam/29.2.163 may be missing for title: The overall elastic moduli of a dilute suspension of spheres
- https://doi.org/10.1098/rsif.2015.0936 may be missing for title: Hotspots of boundary accumulation: dynamics and statistics of micro-swimmers in flowing films
- https://doi.org/10.1017/jfm.2015.78 may be missing for title: Phoretic self-propulsion at large PĂ©clet numbers
- https://doi.org/10.1088/0034-4885/79/5/053901 may be missing for title: Effective drifts in dynamical systems with multiplicative noise: a review of recent progress
- https://doi.org/10.1016/b978-0-12-391927-4.10024-6 may be missing for title: Intermolecular and surface forces
- https://doi.org/10.1038/s41467-019-11842-1 may be missing for title: Experimental Observation of Flow Fields Around Active Janus Spheres
- https://doi.org/10.1017/s0022112010004404 may be missing for title: Particle motion driven by solute gradients with application to autonomous motion: continuum and colloidal perspectives
- https://doi.org/10.1063/1.1323224 may be missing for title: Improved tangent estimate in the nudged elastic band method for finding minimum energy paths and saddle points
- https://doi.org/10.1063/1.5082284 may be missing for title: Which Interactions Dominate in Active Colloids?
- https://doi.org/10.1103/physrevlett.123.148005 may be missing for title: Hydrodynamically interrupted droplet growth in scalar active matter
INVALID DOIs
- 10.1093/humupd is INVALID
- 10.1209/epl is INVALID
- 10.1209/0295-5075 is INVALID
- 10.1088/1367-2630 is INVALID
- 10.1007%2FBF01535657 is INVALID
- 10.1017/S096249290200007 is INVALID
- 10.1088/1367-2630/aa5f80/meta is INVALID
- 10.1038/s41567 is INVALID
@rajeshrinet also, can you perhaps pare your bib file down to only those cited in the paper?
@rajeshrinet regarding the paper build error, I think the issue is the SVG badge you are trying to include. Can you remove, or convert to a PNG (for example)?
@kyleniemeyer thanks very much for your comments. I have removed the badge and pared down the bib file. I hope that solves the PDF compilation.
@whedon generate pdf
@kyleniemeyer it seems I need use [@article1CITE] for each citation. It can not be done in a bunch like [@article1CITE, @article2CITE]?
@rajeshrinet You can include multiple citations together, but you need semicolons rather than commas between each citation: https://joss.readthedocs.io/en/latest/submitting.html#example-paper-and-bibliography
@kyleniemeyer thanks very much for your prompt response. I will fix that now.
@whedon generate pdf
@whedon generate pdf
@whedon generate pdf
@whedon generate pdf
@kyleniemeyer and @whedon thanks for the article proof and this awesome interface.
Here is a list of suggested referees:
Fergus Cooper. Email: fergus.cooper@cs.ox.ac.uk, University of Oxford
Konrad Hinsen. Email : konrad.hinsen@cnrs.fr. Centre de Biophysique Moléculaire (UPR4301 CNRS), Orléans, France.
Daniel Lagrava. Emai: .dlagrava@gmail.com. Research Software Engineer, NIWA, NZ
Dave Pine. Email: pine@nyu.edu. Chemical and Biomolecular Engineering Department, New York University, USA.
Martin Robinson. Email: martinjrobins@gmail.com, University of Oxford
Hi @harpolea, apologies for simultaneous invitations, but this looks like it might be in your wheelhouse. Can you edit this submission as well?
@whedon invite @harpolea as editor
@harpolea has been invited to edit this submission.
@whedon generate pdf
PDF failed to compile for issue #2299 with the following error:
Error reading bibliography ./paper.bib (line 269, column 1): unexpected end of input expecting "\"", "\" or "{" Error running filter pandoc-citeproc: Filter returned error status 1 Looks like we failed to compile the PDF
@whedon generate pdf
@rajeshrinet - also, it would be very helpful if you could truncate your BibTeX file to only include the actual papers/entities that you're citing in the JOSS paper.
@arfon I have now removed all the remaining entries from bib which were not cited in JOSS paper.
@whedon generate pdf
@whedon generate pdf
@kyleniemeyer I'd be happy to edit this one as well!
@whedon assign @harpolea as editor
OK, the editor is @harpolea
Hi @rajeshrinet - thanks for the reviewer suggestions! I shall reach out to them now
Hi @harpolea - thanks very much!
@whedon assign @fcooper8472 as reviewer
OK, @fcooper8472 is now a reviewer
Hi @rajeshrinet, it's come to my attention that a paper on this library has already been submitted to arXiv (https://arxiv.org/abs/1910.00909). Has this paper been accepted by another journal? If so, then I'm afraid we may not be able to accept this submission as it would involve a significant amount of overlap and duplication with an existing publication.
Hi @harpolea,
No https://arxiv.org/abs/1910.00909 has not been accepted (or under consideration) for publication elsewhere. In fact, our submission to JOSS is based on https://arxiv.org/abs/1910.00909 and has been reduced in size to match the word limit. We cite it in the submission as it contains more details. I hope that is okay?
Edit I can add a line in the submission to explicitly mention the point that an expanded version of this manuscript is available on arxiv.
@harpolea @rajeshrinet this seems fine to me. @harpolea is right that it would not be appropriate to have an equivalent software paper under review (or published) at a different journal, but a preprint, whether extended or not, is fine.
I think citing the arXiv eprint in this article as a sort of extended documentation/additional examples is a good idea.
@whedon generate pdf
Hi @rajeshrinet, thanks for your reply - that all sounds fine to me!
@whedon add @khinsen as reviewer
OK, @khinsen is now a reviewer
@whedon start review
OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/2318.
Submitting author: @rajeshrinet (Rajesh Singh) Repository: https://github.com/rajeshrinet/pystokes Version: v2.1.1 Editor: @harpolea Reviewers: @fcooper8472, @khinsen Managing EiC: Kyle Niemeyer
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