[PRE REVIEW]: Sit2StandPy: An Open-Source Python Package for Detecting and Quantifying Sit-to-Stand Transitions Using an Accelerometer on the Lower Back'

whedon commented 4 years ago

Submitting author: @LukasAdamowicz (Lukas Adamowicz) Repository: https://github.com/PfizerRD/sit2standpy Version: v1.0.0 Editor: @galessiorob Reviewers: @jsgalan, @gweissman Managing EiC: Arfon Smith

:warning: JOSS reduced service mode :warning:

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Author instructions

Thanks for submitting your paper to JOSS @LukasAdamowicz. Currently, there isn't an JOSS editor assigned to your paper.

@LukasAdamowicz if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

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whedon commented 4 years ago

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

:warning: JOSS reduced service mode :warning:

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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whedon commented 4 years ago

Software report (experimental):

github.com/AlDanial/cloc v 1.84  T=0.20 s (265.8 files/s, 23302.8 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          30            665           1333           1843
Markdown                         4             68              0            168
TeX                              1             13              0            117
reStructuredText                14             67            116             86
DOS Batch                        1              8              1             26
YAML                             1              5             10             14
make                             1              4              6              9
-------------------------------------------------------------------------------
SUM:                            52            830           1466           2263
-------------------------------------------------------------------------------

Statistical information for the repository '2380' was gathered on 2020/06/23.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
Lukas Adamowicz                295         14545          10674          100.00

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
Lukas Adamowicz            3841           26.4          7.0               10.18

whedon commented 4 years ago

Reference check summary:

OK DOIs

- 10.1109/MCSE.2011.37 is OK
- 10.21105/joss.01237 is OK
- 10.5281/zenodo.3898987 is OK

MISSING DOIs

- https://doi.org/10.1088/0967-3334/33/11/1947 may be missing for title: Inertial sensor motion analysis of gait, sit–stand transfers and step-up transfers: differentiating knee patients from healthy controls
- https://doi.org/10.1016/j.jbiomech.2009.06.023 may be missing for title: Age impairs sit-to-walk motor performance
- https://doi.org/10.1016/j.gaitpost.2012.10.008 may be missing for title: Automated approach for quantifying the repeated sit-to-stand using one body fixed sensor in young and older adults
- https://doi.org/10.1186/s12984-017-0241-2 may be missing for title: Auto detection and segmentation of daily living activities during a Timed Up and Go task in people with Parkinson’s disease using multiple inertial sensors
- https://doi.org/10.1186/s12984-015-0026-4 may be missing for title: Auto detection and segmentation of physical activities during a Timed-Up-and-Go (TUG) task in healthy older adults using multiple inertial sensors
- https://doi.org/10.3389/fneur.2018.00652 may be missing for title: Validation of a Lower Back “Wearable”-Based Sit-to-Stand and Stand-to-Sit Algorithm for Patients With Parkinson’s Disease and Older Adults in a Home-Like Environment
- https://doi.org/10.1016/j.patrec.2018.03.020 may be missing for title: Probabilistic identification of sit-to-stand and stand-to-sit with a wearable sensor
- https://doi.org/10.1093/geronj/49.2.m85 may be missing for title: A Short Physical Performance Battery Assessing Lower Extremity Function: Association With Self-Reported Disability and Prediction of Mortality and Nursing Home Admission

INVALID DOIs

- None

whedon commented 4 years ago

:point_right: Check article proof :page_facing_up: :point_left:

arfon commented 4 years ago

:wave: @LukasAdamowicz - Thanks for your submission to JOSS. As described in our blog post announcing the reopening of JOSS, we're currently working in a "reduced service mode", limiting the number of papers assigned to any individual editor.

Since reopening JOSS earlier in the month we've had a very large number of papers submitted and as such, yours has been put in our backlog that we will be working through over the coming weeks and months.

Thanks in advance for your patience!

arfon commented 4 years ago

@whedon invite @galessiorob as editor

:wave: @galessiorob - would you be willing to edit this submission for JOSS?

whedon commented 4 years ago

@galessiorob has been invited to edit this submission.

galessiorob commented 4 years ago

👋 Hi @LukasAdamowicz!

I am in the process of assigning reviewers to this submission, but if you have any suggestions for reviewers please let me know in a comment without tagging them directly.

In the meantime, it looks like you're missing some DOIs, if you want to start adding those that would be great.

Many thanks!

Basic checks:

[x] There’s a general description of the software
[x] The software is within scope as research software
[x] OSI-approved license: MIT License

danielskatz commented 4 years ago

@galessiorob - when you agree to edit a submission, you should @whedon assign @galessiorob as editor (or @whedon assign me as editor) and if the submission has been waitlisted, remove the waitlist label I'll do this now for your 2 that you agreed to edit

danielskatz commented 4 years ago

@whedon assign @galessiorob as editor

whedon commented 4 years ago

OK, the editor is @galessiorob

galessiorob commented 4 years ago

@whedon assign @jsgalan as reviewer

whedon commented 4 years ago

OK, @jsgalan is now a reviewer

galessiorob commented 4 years ago

@whedon add @gweissmane as reviewer

whedon commented 4 years ago

OK, @gweissmane is now a reviewer