[PRE REVIEW]: gLBM: A GPU enabled Lattice Boltzmann Method Library

[whedon]

Submitting author: @rclipp (Rachel Clipp) Repository: https://gitlab.kitware.com/LBM/lattice-boltzmann-solver Version: v1.0.0 Editor: @eloisabentivegna Reviewers: @ianhinder, @gouarin Managing EiC: Kevin M. Moerman

:warning: JOSS reduced service mode :warning:

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

Author instructions

Thanks for submitting your paper to JOSS @rclipp. Currently, there isn't an JOSS editor assigned to your paper.

The author's suggestion for the handling editor is @Kevin-Mattheus-Moerman.

@rclipp if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

[whedon]

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

:warning: JOSS reduced service mode :warning:

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

[whedon]

PDF failed to compile for issue #2517 with the following error:

/app/vendor/ruby-2.4.4/lib/ruby/2.4.0/find.rb:43:in block in find': No such file or directory - tmp/2517 (Errno::ENOENT) from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/find.rb:43:incollect!' from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/find.rb:43:in find' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-446a0298a33b/lib/whedon/processor.rb:61:infind_paper_paths' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-446a0298a33b/bin/whedon:50:in prepare' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/command.rb:27:inrun' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in invoke_command' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor.rb:387:indispatch' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/base.rb:466:in start' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-446a0298a33b/bin/whedon:119:in<top (required)>' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in load' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in

'

[Kevin-Mattheus-Moerman]

@whedon generate pdf from branch joss

[whedon]

Attempting PDF compilation from custom branch joss. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #2517 with the following error:

sh: 1: cd: can't cd to tmp/2517 /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/find.rb:43:in block in find': No such file or directory - tmp/2517 (Errno::ENOENT) from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/find.rb:43:incollect!' from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/find.rb:43:in find' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-446a0298a33b/lib/whedon/processor.rb:61:infind_paper_paths' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-446a0298a33b/bin/whedon:50:in prepare' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/command.rb:27:inrun' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in invoke_command' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor.rb:387:indispatch' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/base.rb:466:in start' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-446a0298a33b/bin/whedon:119:in<top (required)>' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in load' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in

'

[Kevin-Mattheus-Moerman]

@openjournals/dev can you check this error :point_up:. Is this not compiling because the folder the paper is in is called joss not paper?

The paper is currently here: https://gitlab.kitware.com/LBM/lattice-boltzmann-solver/-/tree/joss/joss

[Kevin-Mattheus-Moerman]

@whedon check repository

[Kevin-Mattheus-Moerman]

@labarba do you have the bandwidth to handle this submission? It does seem like your cup of tea :tea:

Alternatively @eloisabentivegna @harpolea can one of you edit this one? Thanks

[eloisabentivegna]

@whedon assign @eloisabentivegna as editor

@Kevin-Mattheus-Moerman, sure!

[whedon]

OK, the editor is @eloisabentivegna

[arfon]

@openjournals/dev can you check this error ☝️. Is this not compiling because the folder the paper is in is called joss not paper?

The issue is that Whedon (and git) can't clone a URL like this: https://gitlab.kitware.com/LBM/lattice-boltzmann-solver/-/tree/joss/joss

I've updated the URL for the repo to be https://gitlab.kitware.com/LBM/lattice-boltzmann-solver

[arfon]

@whedon generate pdf

[whedon]

:point_right: Check article proof :page_facing_up: :point_left:

[eloisabentivegna]

@whedon add @ianhinder as reviewer

[whedon]

OK, @ianhinder is now a reviewer

[eloisabentivegna]

@whedon add @gouarin as reviewer

[whedon]

OK, @gouarin is now a reviewer

[eloisabentivegna]

@whedon start review

[whedon]

OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/2555.