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[PRE REVIEW]: The SAGE Rejected Article Tracker #3251

Closed whedon closed 3 years ago

whedon commented 3 years ago

Submitting author: @ad48 (Adam Day) Repository: https://github.com/sagepublishing/rejected_article_tracker_pkg Version: 1.5.0 Editor: @danielskatz Reviewers: @mfenner, @dhimmel Managing EiC: Kristen Thyng

:warning: JOSS reduced service mode :warning:

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

Author instructions

Thanks for submitting your paper to JOSS @ad48. Currently, there isn't an JOSS editor assigned to your paper.

The author's suggestion for the handling editor is @danielskatz.

@ad48 if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands
whedon commented 3 years ago

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

:warning: JOSS reduced service mode :warning:

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf
whedon commented 3 years ago 
Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.23 s (307.3 files/s, 19138.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          61            566            520           2216
Markdown                         5            102              0            348
TeX                              1              5              0            164
Jupyter Notebook                 1              0            330             88
YAML                             1              7              0             41
Bourne Shell                     2              4             21             10
-------------------------------------------------------------------------------
SUM:                            71            684            871           2867
-------------------------------------------------------------------------------

Statistical information for the repository '530daf049251f652305208f6' was
gathered on 2021/05/05.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
Adam Day                        32          2446            171           66.32
Andy Hails                      21          1159            137           32.84
aday                             4            19             12            0.79
andyleanlibrary                  1             1              1            0.05

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
Adam Day                   2362           96.6          2.6               13.12
Andy Hails                  920           79.4          1.6                2.61
aday                         19          100.0          1.4                5.26
andyleanlibrary               1          100.0          2.1                0.00
whedon commented 3 years ago 
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1002/bjs.6880 is OK
- 10.1007/s00134-018-5407-2 is OK
- 10.3138/W706-5884-KG84-J282 is OK
- 10.1111/anae.13829 is OK
- 10.23876/j.krcp.20.392 is OK
- 10.1177/0011392116663807 is OK
- 10.1093/ije/dyz187 is OK
- 10.1186/s41073-017-0031-1 is OK
- 10.1371/journal.pbio.3000959 is OK

MISSING DOIs

- None

INVALID DOIs

- None
whedon commented 3 years ago

PDF failed to compile for issue #3251 with the following error: 

 /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:72:in `block in build_affiliation_string': Problem with affiliations for Andrew Hails, perhaps the affiliations index need quoting? (RuntimeError)
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:71:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:71:in `build_affiliation_string'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:17:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:205:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:205:in `block in parse_authors'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:202:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:202:in `parse_authors'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:93:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/processor.rb:38:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/processor.rb:38:in `set_paper'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/bin/whedon:58:in `prepare'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/command.rb:27:in `run'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in `invoke_command'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor.rb:387:in `dispatch'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/base.rb:466:in `start'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/bin/whedon:131:in `<top (required)>'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `load'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `<main>'
kthyng commented 3 years ago

Note that this is a resubmission of #2840.

kthyng commented 3 years ago

Hi @ad48 and thanks for your submission. Unfortunately I've needed to add it to a backlog of submissions since our editors in the relevant areas are overburdened currently. Thank you for your patience. In the meantime, could you take a look at the paper compilation errors?

ad48 commented 3 years ago

Hi @kthyng , yes I will take a look. It's odd, we had the same issue last time and it seems to compile ok when we use the tool provided.

ad48 commented 3 years ago

I noticed that our affiliation contains an apostrophe. Guessing this is the source of the problem if it's interpreted as a quote. I have now put the affiliation into double quotes to avoid ambiguity. Again, paper appears to compile correctly at https://whedon.theoj.org/ Is there anything more to do just now? Please let me know.

ad48 commented 3 years ago

@whedon generate pdf

whedon commented 3 years ago

PDF failed to compile for issue #3251 with the following error: 

 /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:72:in `block in build_affiliation_string': Problem with affiliations for Andrew Hails, perhaps the affiliations index need quoting? (RuntimeError)
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:71:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:71:in `build_affiliation_string'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:17:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:205:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:205:in `block in parse_authors'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:202:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:202:in `parse_authors'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:93:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/processor.rb:38:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/processor.rb:38:in `set_paper'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/bin/whedon:58:in `prepare'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/command.rb:27:in `run'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in `invoke_command'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor.rb:387:in `dispatch'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/base.rb:466:in `start'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/bin/whedon:131:in `<top (required)>'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `load'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `<main>'
ad48 commented 3 years ago

@whedon generate pdf

whedon commented 3 years ago

PDF failed to compile for issue #3251 with the following error: 

 /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:72:in `block in build_affiliation_string': Problem with affiliations for Andrew Hails, perhaps the affiliations index need quoting? (RuntimeError)
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:71:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:71:in `build_affiliation_string'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:17:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:205:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:205:in `block in parse_authors'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:202:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:202:in `parse_authors'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:93:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/processor.rb:38:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/processor.rb:38:in `set_paper'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/bin/whedon:58:in `prepare'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/command.rb:27:in `run'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in `invoke_command'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor.rb:387:in `dispatch'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/base.rb:466:in `start'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/bin/whedon:131:in `<top (required)>'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `load'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `<main>'
ad48 commented 3 years ago

@whedon generate pdf

whedon commented 3 years ago

PDF failed to compile for issue #3251 with the following error: 

 /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:72:in `block in build_affiliation_string': Problem with affiliations for Andrew Hails, perhaps the affiliations index need quoting? (RuntimeError)
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:71:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:71:in `build_affiliation_string'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/author.rb:17:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:205:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:205:in `block in parse_authors'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:202:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:202:in `parse_authors'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:93:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/processor.rb:38:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/processor.rb:38:in `set_paper'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/bin/whedon:58:in `prepare'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/command.rb:27:in `run'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in `invoke_command'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor.rb:387:in `dispatch'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/base.rb:466:in `start'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/bin/whedon:131:in `<top (required)>'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `load'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `<main>'
ad48 commented 3 years ago

@whedon generate pdf

whedon commented 3 years ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

kthyng commented 3 years ago

@sbenthall could you edit this submission?

kthyng commented 3 years ago

@whedon invite @sbenthall as editor

whedon commented 3 years ago

@sbenthall has been invited to edit this submission.

danielskatz commented 3 years ago

I'll go ahead and take this one

danielskatz commented 3 years ago

@whedon assign me as editor

whedon commented 3 years ago

OK, the editor is @danielskatz

danielskatz commented 3 years ago

👋 @ad48 - if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).

danielskatz commented 3 years ago

👋 @jodischneider - Would you (or someone in your group) be willing to review this submission to JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

danielskatz commented 3 years ago

👋 @jasonpriem, @hpiwowar, @mfenner - Would one of you be willing to review this submission to JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

hpiwowar commented 3 years ago

Sorry Dan, @jasonpriem and I are swamped right now and not able to do any reviews.

danielskatz commented 3 years ago

@hpiwowar - thanks for the quick response in any case

ad48 commented 3 years ago

Hi @danielskatz Thanks for helping with our submission. We will take a look at the list and get back to you.

mfenner commented 3 years ago

I can review.

ad48 commented 3 years ago

@danielskatz I looked at the spreadsheet and found these names who seem like they would have the right skills and interests.

-- Bibliometrics + Python gagolews (there are a few others with Bibliometrics / Scientometrics in their skills, but not Python)

-- ScholComms + Python dhimmel

-- NLP + Python bagheria indika.kahanda at montana (the NLP in our application is very basic, so on the one hand a reviewer with NLP skills might help improve it, on the other they might not find much of interest, so I'm not sure if this is the right way to go)

danielskatz commented 3 years ago

Thanks @mfenner - I'll add you, but we won't start the review (which will happen in a new issue) until we find one more reviewer as well.

danielskatz commented 3 years ago

@whedon assign @mfenner as reviewer

whedon commented 3 years ago

OK, @mfenner is now a reviewer

danielskatz commented 3 years ago

👋 @gagolews, @dhimmel - Would one of you be willing to review this submission to JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

dhimmel commented 3 years ago

I accept!

danielskatz commented 3 years ago

great, thanks! - I'll add you and we'll get started

danielskatz commented 3 years ago

@whedon add @dhimmel as reviewer

whedon commented 3 years ago

OK, @dhimmel is now a reviewer

danielskatz commented 3 years ago

@whedon start review

whedon commented 3 years ago

OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/3348.

jodischneider commented 3 years ago

Sorry, I'm overbooked - but feel free to ask me for another scholcomm project in the future, or if you lose a quorum of reviewers on this one!

On Tue, Jun 8, 2021 at 1:31 PM Daniel S. Katz @.***> wrote:

👋 @jodischneider https://github.com/jodischneider - Would you (or someone in your group) be willing to review this submission to JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/3251#issuecomment-856999586, or unsubscribe https://github.com/notifications/unsubscribe-auth/AADVGZUDDEMAGN2PS2QIN4TTRZOZ7ANCNFSM44FADMRA .

gagolews commented 3 years ago

Apologies, extremely busy atm too.