[REVIEW]: AuditoryStimuli.jl: A Julia package for generating real-time auditory stimuli

whedon commented 3 years ago

Submitting author: @rob-luke (Robert Luke) Repository: https://github.com/rob-luke/AuditoryStimuli.jl Version: v0.0.11 Editor: @bmcfee Reviewer: @vahid-sb, @jongwook Archive: 10.5281/zenodo.5525443

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Markdown: [![status](https://joss.theoj.org/papers/b91a016d27744caa7bce0ad558c177ba/status.svg)](https://joss.theoj.org/papers/b91a016d27744caa7bce0ad558c177ba)

Reviewers and authors:

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Reviewer instructions & questions

@vahid-sb & @jongwook, please carry out your review in this issue by updating the checklist below. If you cannot edit the checklist please:

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✨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest ✨

Review checklist for @vahid-sb

✨ Important: Please do not use the Convert to issue functionality when working through this checklist, instead, please open any new issues associated with your review in the software repository associated with the submission. ✨

Conflict of interest

[x] I confirm that I have read the JOSS conflict of interest (COI) policy and that: I have no COIs with reviewing this work or that any perceived COIs have been waived by JOSS for the purpose of this review.

Code of Conduct

[x] I confirm that I read and will adhere to the JOSS code of conduct.

General checks

[x] Repository: Is the source code for this software available at the repository url?
[x] License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
[x] Contribution and authorship: Has the submitting author (@rob-luke) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?
[x] Substantial scholarly effort: Does this submission meet the scope eligibility described in the JOSS guidelines

Functionality

[x] Installation: Does installation proceed as outlined in the documentation?
[x] Functionality: Have the functional claims of the software been confirmed?
[x] Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

[x] A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
[x] Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
[x] Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
[x] Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
[x] Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?
[x] Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

[x] Summary: Has a clear description of the high-level functionality and purpose of the software for a diverse, non-specialist audience been provided?
[x] A statement of need: Does the paper have a section titled 'Statement of Need' that clearly states what problems the software is designed to solve and who the target audience is?
[x] State of the field: Do the authors describe how this software compares to other commonly-used packages?
[x] Quality of writing: Is the paper well written (i.e., it does not require editing for structure, language, or writing quality)?
[x] References: Is the list of references complete, and is everything cited appropriately that should be cited (e.g., papers, datasets, software)? Do references in the text use the proper citation syntax?

Review checklist for @jongwook

✨ Important: Please do not use the Convert to issue functionality when working through this checklist, instead, please open any new issues associated with your review in the software repository associated with the submission. ✨

Conflict of interest

[x] I confirm that I have read the JOSS conflict of interest (COI) policy and that: I have no COIs with reviewing this work or that any perceived COIs have been waived by JOSS for the purpose of this review.

Code of Conduct

[x] I confirm that I read and will adhere to the JOSS code of conduct.

General checks

[x] Repository: Is the source code for this software available at the repository url?
[x] License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
[x] Contribution and authorship: Has the submitting author (@rob-luke) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?
[x] Substantial scholarly effort: Does this submission meet the scope eligibility described in the JOSS guidelines

Functionality

[x] Installation: Does installation proceed as outlined in the documentation?
[x] Functionality: Have the functional claims of the software been confirmed?
[x] Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

[x] A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
[x] Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
[x] Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
[x] Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
[x] Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?
[x] Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

[x] Summary: Has a clear description of the high-level functionality and purpose of the software for a diverse, non-specialist audience been provided?
[x] A statement of need: Does the paper have a section titled 'Statement of Need' that clearly states what problems the software is designed to solve and who the target audience is?
[x] State of the field: Do the authors describe how this software compares to other commonly-used packages?
[x] Quality of writing: Is the paper well written (i.e., it does not require editing for structure, language, or writing quality)?
[x] References: Is the list of references complete, and is everything cited appropriately that should be cited (e.g., papers, datasets, software)? Do references in the text use the proper citation syntax?

bmcfee commented 3 years ago

@whedon recommend-accept

whedon commented 3 years ago

Attempting dry run of processing paper acceptance...

whedon commented 3 years ago

PDF failed to compile for issue #3613 with the following error:

 Can't find any papers to compile :-(

bmcfee commented 3 years ago

Thanks for the fixes @rob-luke -- everything's looking good!

bmcfee commented 3 years ago

@whedon recommend-accept from branch manuscript

whedon commented 3 years ago

Attempting dry run of processing paper acceptance...

whedon commented 3 years ago

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1117/1.NPh.8.2.025008 is OK
- 10.21105/joss.03284 is OK
- 10.3758/s13428-018-01193-y is OK
- 10.25080/majora-7b98e3ed-003 is OK
- 10.1016/j.neuroimage.2013.10.027 is OK
- 10.1155/2011/156869 is OK
- 10.1137/141000671 is OK
- 10.1109/TNSRE.2016.2551302 is OK
- 10.1016/j.neuroimage.2018.01.033 is OK

MISSING DOIs

- None

INVALID DOIs

- None

whedon commented 3 years ago

:wave: @openjournals/joss-eics, this paper is ready to be accepted and published.

Check final proof :point_right: https://github.com/openjournals/joss-papers/pull/2607

If the paper PDF and Crossref deposit XML look good in https://github.com/openjournals/joss-papers/pull/2607, then you can now move forward with accepting the submission by compiling again with the flag deposit=true e.g.

@whedon accept deposit=true from branch manuscript

kthyng commented 3 years ago

Hi @rob-luke! Final steps to wrap up here. Can you update the Zenodo archive metadata so the title and author list exactly match the JOSS paper?

kthyng commented 3 years ago

Paper comments:

first page, "existing tools such as (Carcagno 2012)" — this reference should be inline, not parenthetical. You can make this change by removing the [] around the reference.
final sentence in that paragraph — don't start a sentence with "i.e", at least write out as 'That is' or change wording.
Same parenthetical problem with a reference in the "Notes" section.
fix capitalization in your references, for example "python" and "julia" should be capitalized. You can preserve capitalization in your .bib file by putting {} around strings.

rob-luke commented 3 years ago

@whedon generate pdf from branch manuscript

whedon commented 3 years ago

Attempting PDF compilation from custom branch manuscript. Reticulating splines etc...

whedon commented 3 years ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

rob-luke commented 3 years ago

Thanks for carefully checking the details @kthyng. I have updated the zenodo title and made the changes to the manuscript and bib that you suggested. Please let me know if there is anything else I should do. Cheers

kthyng commented 3 years ago

@rob-luke ok everything looks good! We can proceed.

kthyng commented 3 years ago

@whedon accept deposit=true from branch manuscript

whedon commented 3 years ago

Doing it live! Attempting automated processing of paper acceptance...

whedon commented 3 years ago

🐦🐦🐦 👉 Tweet for this paper 👈 🐦🐦🐦

whedon commented 3 years ago

🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! 🚨🚨🚨

Here's what you must now do:

Check final PDF and Crossref metadata that was deposited :point_right: https://github.com/openjournals/joss-papers/pull/2614
Wait a couple of minutes, then verify that the paper DOI resolves https://doi.org/10.21105/joss.03613
If everything looks good, then close this review issue.
Party like you just published a paper! 🎉🌈🦄💃👻🤘

Any issues? Notify your editorial technical team...

bmcfee commented 3 years ago

Congrats @rob-luke ! :tada:

And thanks again to reviewers @jongwook and @vahid-sb !

kthyng commented 3 years ago

Congrats on your new publication @rob-luke! Many thanks to editor @bmcfee and reviewers @vahid-sb and @jongwook!!

whedon commented 3 years ago

:tada::tada::tada: Congratulations on your paper acceptance! :tada::tada::tada:

If you would like to include a link to your paper from your README use the following code snippets:

Markdown:
[![DOI](https://joss.theoj.org/papers/10.21105/joss.03613/status.svg)](https://doi.org/10.21105/joss.03613)

HTML:
<a style="border-width:0" href="https://doi.org/10.21105/joss.03613">
  <img src="https://joss.theoj.org/papers/10.21105/joss.03613/status.svg" alt="DOI badge" >
</a>

reStructuredText:
.. image:: https://joss.theoj.org/papers/10.21105/joss.03613/status.svg
   :target: https://doi.org/10.21105/joss.03613

This is how it will look in your documentation:

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rob-luke commented 3 years ago

Thank you @kthyng @bmcfee, and please keep me in mind as a reviewer in the future (I signed up previously).

Thanks @jongwook and @vahid-sb for the review!

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