[PRE REVIEW]: SPbLA: The Library of GPGPU-powered Sparse Boolean Linear Algebra Operations

[whedon]

Submitting author: @EgorOrachyov (Egor Orachev) Repository: https://github.com/JetBrains-Research/spbla Version: v1.0.0 Editor: @Nikoleta-v3 Reviewers: @abb58, @mlxd Managing EiC: Arfon Smith

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[whedon]

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

:warning: JOSS reduced service mode :warning:

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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[whedon]

Wordcount for paper.md is 394

[whedon]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1186/1471-2105-14-149 is OK
- 10.1145/2499370.2462159 is OK
- 10.1145/3210259.3210264 is OK
- 10.1007/978-3-030-54832-2_6 is OK

MISSING DOIs

- 10.1007/978-3-319-46523-4_38 may be a valid DOI for title: Context-Free Path Queries on RDF Graphs

INVALID DOIs

- None

[arfon]

@whedon generate pdf from branch joss-paper

[whedon]

Attempting PDF compilation from custom branch joss-paper. Reticulating splines etc...

[whedon]

Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.59 s (508.9 files/s, 91080.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
C/C++ Header                    96           4745           6380          22648
C++                             98           1677           1552           5539
OpenCL                          31            961            215           3345
CUDA                            29            602            605           1850
Python                          20            505            546           1128
Markdown                         8            204              0            708
CMake                            9             85             31            382
Bourne Shell                     6             17             21            109
YAML                             2             14              2            107
TeX                              1              5              0             70
SVG                              2              0              0              2
-------------------------------------------------------------------------------
SUM:                           302           8815           9352          35888
-------------------------------------------------------------------------------

Statistical information for the repository '67e793db70d5c4c9ac8b6c67' was
gathered on 2021/09/07.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
Egor19035                       11          7145            913           11.05
EgorOrachev                      3            11           8250           11.33
Maria Karpenko                  15         45080          11508           77.62

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
EgorOrachev               11123       101118.2          2.7               25.60
Maria Karpenko            33597           74.5          2.5               15.90

[whedon]

PDF failed to compile for issue #3699 with the following error:

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[WARNING] Could not convert image '/tmp/tex2pdf.-f464637ce783572b/7933560568cb30b1dc8f6abe32d63775dac1168c.svg': check that rsvg-convert is in path.
  rsvg-convert: createProcess: runInteractiveProcess: exec: does not exist (No such file or directory)
! Unable to read an entire line---bufsize=200000.
Please increase buf_size in texmf.cnf.

xdvipdfmx:fatal: File ended prematurely

Output file removed.
! Unable to read an entire line---bufsize=200000.
Please increase buf_size in texmf.cnf.

xdvipdfmx:fatal: File ended prematurely

Output file removed.
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 We now make it that large for the rest of the document.
 This may cause the page layout to be inconsistent, however.

[2]
Looks like we failed to compile the PDF

[arfon]

@EgorOrachyov – apologies, but we need you to convert your SVG images to PNGs. (I realize this will have worked fine with the GitHub Action). Could you do that please?

[EgorOrachyov]

Yes, sure. I've already pushed figures converted to PNGs.

Best regards, Egor Orachev

вт, 7 сент. 2021 г. в 14:50, Arfon Smith @.***>:

@EgorOrachyov https://github.com/EgorOrachyov – apologies, but we need you to convert your SVG images to PNGs. (I realize this will have worked fine with the GitHub Action). Could you do that please?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/3699#issuecomment-914236950, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHTDECFO3FXS7VXGU6OLPI3UAX4CBANCNFSM5DSGVCYQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

[EgorOrachyov]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #3699 with the following error:

 /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon.rb:155:in `block in check_orcids': Problem with ORCID (0000-0000-0000-0000) for Egor Orachev^[co-first author] (RuntimeError)
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon.rb:153:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon.rb:153:in `check_orcids'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon.rb:90:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon/processor.rb:38:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon/processor.rb:38:in `set_paper'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/bin/whedon:58:in `prepare'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/command.rb:27:in `run'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in `invoke_command'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor.rb:387:in `dispatch'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/base.rb:466:in `start'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/bin/whedon:131:in `<top (required)>'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `load'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `<main>'

[EgorOrachyov]

@whedon generate pdf from branch joss-paper

[whedon]

Attempting PDF compilation from custom branch joss-paper. Reticulating splines etc...

[whedon]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[arfon]

@whedon invite @Nikoleta-v3 as editor

👋 @Nikoleta-v3 – would you be willing to take this submission on for us?

[whedon]

@Nikoleta-v3 has been invited to edit this submission.

[Nikoleta-v3]

@whedon assign @Nikoleta-v3 as editor

[whedon]

OK, the editor is @Nikoleta-v3

[Nikoleta-v3]

@EgorOrachyov thank you again for your submission with JOSS, could you take a look through https://bit.ly/joss-reviewers to suggest some potential reviewers 😄

[EgorOrachyov]

@Nikoleta-v3 I think I could suggest the following reviewers:

• hausen
• arghdos
• pszi1ard
• abb58
• JaroslavHron
• sarats
• camillescott
• mlxd
• wrathematics

[Nikoleta-v3]

👋 @hausen & @arghdos & @pszi1ard & @abb58 would any of you be willing to review this submission for JOSS?

We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

The submission I'd like you to review is titled: "SPbLA: The Library of GPGPU-powered Sparse Boolean Linear Algebra Operations". You can find more information at the top of this Github issue 🆙

Please let me know if you're available 😄 Thank you!

[Nikoleta-v3]

👋 @JaroslavHron & @sarats & @camillescott & @mlxd would any of you be willing to review this submission for JOSS?

We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

The submission I'd like you to review is titled: "SPbLA: The Library of GPGPU-powered Sparse Boolean Linear Algebra Operations". You can find more information at the top of this Github issue 🆙

Please let me know if you're available 😄 Thank you!

[abb58]

@Nikoleta-v3 Thanks for getting in touch. I am willing to participate in reviewing your submission to JOSS.

[Nikoleta-v3]

@whedon assign @abb58 as reviewer

[whedon]

OK, @abb58 is now a reviewer

[mlxd]

Hi @Nikoleta-v3 I can review this beginning next week. If that's an issue and somebody else is available before then, feel free to tag them instead.

[Nikoleta-v3]

That's perfect @mlxd! Thank you

[Nikoleta-v3]

@whedon add @mlxd as reviewer

[whedon]

OK, @mlxd is now a reviewer

[Nikoleta-v3]

@whedon start review

[whedon]

OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/3743.