Closed editorialbot closed 2 years ago
Thanks @devSJR! I went through the paper again and I think this looks good - I sent another small PR with a couple of minor fixes. Regarding the attachment, I would suggest that you upload the current vignette to e.g. Zenodo or FigShare, and refer to that (you would get a DOI).
Once these things are sorted, the next steps are as follows:
I can then move forward with accepting the submission.
@editorialbot generate pdf
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
Thanks @devSJR! I went through the paper again and I think this looks good - I sent another small PR with a couple of minor fixes. Regarding the attachment, I would suggest that you upload the current vignette to e.g. Zenodo or FigShare, and refer to that (you would get a DOI).
Once these things are sorted, the next steps are as follows:
* [ ] Make a tagged release of the software, and list the version tag of the archived version here. * [ ] Archive the reviewed software in Zenodo or a similar service * [ ] Check that the archival deposit (e.g., in Zenodo) has the correct metadata. In particular, the title and author list should be identical to those of the paper. You can also add the authors' ORCID. * [ ] Please list the DOI of the archived version here.
I can then move forward with accepting the submission.
@csoneson, finally here are the missing bits.
version tag of the archived version: 1.1-2 DOI of the archived version 10.5281/zenodo.7009124 https://doi.org/10.5281/zenodo.7009124
@editorialbot check references
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.5281/zenodo.6957714 is OK
- 10.32614/RJ-2015-011 is OK
- 10.32614/RJ-2013-024 is OK
- 10.3233/JCB-15025 is OK
- 10.1373/clinchem.2014.230656 is OK
- 10.1093/bioinformatics/btx528 is OK
- 10.1093/bioinformatics/btv205 is OK
- 10.1016/j.bdq.2018.08.001 is OK
- 10.1038/srep38951 is OK
- 10.1038/s41598-021-00827-0 is OK
- 10.3390/life11111163 is OK
- 10.1198/106186007X178663 is OK
- 10.1186/gb-2004-5-10-r80 is OK
- 10.1186/1471-2105-9-221 is OK
- 10.1093/bioinformatics/btn227 is OK
- 10.1016/j.bdq.2014.08.002 is OK
- 10.1016/j.ymeth.2009.12.006 is OK
- 10.32614/rj-2011-002 is OK
- 10.18637/jss.v023.i03 is OK
- 10.18637/jss.v062.i07 is OK
- 10.18637/jss.v032.i03 is OK
- 10.1016/j.ymeth.2012.08.011 is OK
- 10.1016/j.bdq.2015.07.001 is OK
- 10.1261/rna.059063.116 is OK
- 10.1016/j.bdq.2017.11.002 is OK
- 10.1016/S0304-3940(02)01423-4 is OK
- 10.1093/clinchem/hvab052 is OK
- 10.1016/j.tibtech.2018.12.002 is OK
- 10.1186/1471-2105-15-138 is OK
- 10.32614/rj-2014-015 is OK
- 10.1093/gigascience/giy077 is OK
- 10.1111/anzs.12200 is OK
- 10.3390/life11111163 is OK
- 10.18637/jss.v049.i09 is OK
MISSING DOIs
- None
INVALID DOIs
- None
@editorialbot set 10.5281/zenodo.7009124 as archive
Done! Archive is now 10.5281/zenodo.7009124
@editorialbot set 1.1-2 as version
Done! version is now 1.1-2
@devSJR Thanks! I'll hand over now to an associate EiC for the final steps. Thanks for submitting to JOSS!
@editorialbot recommend-accept
Attempting dry run of processing paper acceptance...
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.5281/zenodo.6957714 is OK
- 10.32614/RJ-2015-011 is OK
- 10.32614/RJ-2013-024 is OK
- 10.3233/JCB-15025 is OK
- 10.1373/clinchem.2014.230656 is OK
- 10.1093/bioinformatics/btx528 is OK
- 10.1093/bioinformatics/btv205 is OK
- 10.1016/j.bdq.2018.08.001 is OK
- 10.1038/srep38951 is OK
- 10.1038/s41598-021-00827-0 is OK
- 10.3390/life11111163 is OK
- 10.1198/106186007X178663 is OK
- 10.1186/gb-2004-5-10-r80 is OK
- 10.1186/1471-2105-9-221 is OK
- 10.1093/bioinformatics/btn227 is OK
- 10.1016/j.bdq.2014.08.002 is OK
- 10.1016/j.ymeth.2009.12.006 is OK
- 10.32614/rj-2011-002 is OK
- 10.18637/jss.v023.i03 is OK
- 10.18637/jss.v062.i07 is OK
- 10.18637/jss.v032.i03 is OK
- 10.1016/j.ymeth.2012.08.011 is OK
- 10.1016/j.bdq.2015.07.001 is OK
- 10.1261/rna.059063.116 is OK
- 10.1016/j.bdq.2017.11.002 is OK
- 10.1016/S0304-3940(02)01423-4 is OK
- 10.1093/clinchem/hvab052 is OK
- 10.1016/j.tibtech.2018.12.002 is OK
- 10.1186/1471-2105-15-138 is OK
- 10.32614/rj-2014-015 is OK
- 10.1093/gigascience/giy077 is OK
- 10.1111/anzs.12200 is OK
- 10.3390/life11111163 is OK
- 10.18637/jss.v049.i09 is OK
MISSING DOIs
- None
INVALID DOIs
- None
:wave: @openjournals/joss-eics, this paper is ready to be accepted and published.
Check final proof :point_right::page_facing_up: Download article
If the paper PDF and the deposit XML files look good in https://github.com/openjournals/joss-papers/pull/3454, then you can now move forward with accepting the submission by compiling again with the command @editorialbot accept
@editorialbot accept
Doing it live! Attempting automated processing of paper acceptance...
🐦🐦🐦 👉 Tweet for this paper 👈 🐦🐦🐦
🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! 🚨🚨🚨
Here's what you must now do:
Any issues? Notify your editorial technical team...
@jaybee84, @markziemann – many thanks for your reviews here and to @csoneson for editing this submission! JOSS relies upon the volunteer effort of people like you and we simply wouldn't be able to do this without you ✨
@devSJR – your paper is now accepted and published in JOSS :zap::rocket::boom:
:tada::tada::tada: Congratulations on your paper acceptance! :tada::tada::tada:
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Submitting author: !--author-handle-->@devSJR<!--end-author-handle-- (Stefan Rödiger) Repository: https://github.com/PCRuniversum/PCRedux Branch with paper.md (empty if default branch): Version: 1.1-2 Editor: !--editor-->@csoneson<!--end-editor-- Reviewers: @jaybee84, @markziemann Archive: 10.5281/zenodo.7009124
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