Closed editorialbot closed 2 years ago
editorialbot
commented
2 years ago Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.
For a list of things I can do to help you, just type:
@editorialbot commandsFor example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:
@editorialbot generate pdfSoftware report:
github.com/AlDanial/cloc v 1.88 T=2.52 s (402.7 files/s, 148001.4 lines/s)
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Language files blank comment code
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SWIG 3 66734 763 103365
C/C++ Header 261 12751 16085 51555
C++ 97 6812 6188 32858
MATLAB 497 1910 32160 22032
XML 57 0 22 11136
Verilog-SystemVerilog 20 276 583 3070
Python 42 428 403 2455
CMake 14 98 110 442
Bourne Shell 9 15 47 235
Markdown 4 82 0 175
Bourne Again Shell 4 1 0 113
TeX 1 0 0 40
DOS Batch 4 3 0 23
YAML 1 1 4 18
MUMPS 1 0 0 3
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SUM: 1015 89111 56365 227520
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gitinspector failed to run statistical information for the repositoryWordcount for paper.md is 1007
editorialbot
commented
2 years ago Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- None
MISSING DOIs
- 10.1109/access.2022.3161471 may be a valid DOI for title: CONTROL-CORE: A Framework for Simulation and Design of Closed-Loop Peripheral Neuromodulation Control Systems
- 10.1109/tbme.2017.2759667 may be a valid DOI for title: Closed-loop vagus nerve stimulation based on state transition models
- 10.1145/3154979.3154984 may be a valid DOI for title: Generation and proliferation of random directed acyclic graphs for workflow scheduling problem
INVALID DOIs
- None:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
pradeeban
commented
2 years ago Thanks, @editorialbot. The suggested DOIs are correct. I have added the DOIs to the paper now and committed to GitHub.
pradeeban
commented
2 years ago @editorialbot commands
editorialbot
commented
2 years ago Hello @pradeeban, here are the things you can ask me to do:
# List all available commands
@editorialbot commands
# Get a list of all editors's GitHub handles
@editorialbot list editors
# Check the references of the paper for missing DOIs
@editorialbot check references
# Perform checks on the repository
@editorialbot check repository
# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist
# Set a value for branch
@editorialbot set joss-paper as branch
# Generates the pdf paper
@editorialbot generate pdf
# Get a link to the complete list of reviewers
@editorialbot list reviewers
@editorialbot generate pdf
danielskatz
commented
2 years ago @editorialbot check references
editorialbot
commented
2 years ago Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.1109/access.2022.3161471 is OK
- 10.1109/tbme.2017.2759667 is OK
- 10.1145/3154979.3154984 is OK
MISSING DOIs
- None
INVALID DOIs
- None:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
danielskatz
commented
2 years ago @pradeeban - I see your submission note to the editor
The CONTROL-CORE framework, which concore is part of, is published in IEEE Access - https://doi.org/10.1109/ACCESS.2022.3161471. That paper is cited in this JOSS paper. [...] The project's early development happened in a private repository. We made the source code public in the concore-2.0.0 version. The main branch is the stable one, with the dev branch with commits of experimental nature that need additional testing before the merge.
Can you explain how this submission is different than the IEEE Access publication?
pradeeban
commented
2 years ago Hi @danielskatz, A few points:
The IEEE Access paper is about the broad CONTROL-CORE framework/umbrella and significantly focuses on neuroscience. This paper focuses on the concore open source project in a more simplistic, less overwhelming manner.
At the time of the IEEE Access paper submission, the CONTROL-CORE framework was merely an open-source project. We quickly opened the source code (which was initially developed in a private git repository) before publication through bulk "Initial commits."
Since the IEEE Access paper, concore has evolved as a truly open-source project, welcoming open-source contributions (merged in the dev branch). concore Editor is a new addition, adopting the DHGWorkflow for concore.
All the above points make the papers different as in concore open-source project vs. CONTROL-CORE umbrella/framework for neuromodulation control systems.
At the Department of Biomedical Informatics, Emory University, we try to strengthen ourselves as an open-source framework. Many of our projects are open source, and we have been a mentoring organization for Google Summer of Code (GSoC) since 2012 (https://github.com/NISYSLAB/Emory-BMI-GSoC). concore is a new addition to our open source efforts. We hope JOSS will give us more scrutiny and visibility on the open source angle. Although we include the link to the source code in our previous papers, the code repositories are never reviewed, unlike JOSS. We like JOSS for this initiative, highlighting our software efforts alongside the research rather than leaving the source code as a mere footnote.
I hope I have clarified it. Please let me know if you have more questions/comments.
Thank you. Regards, Pradeeban.
danielskatz
commented
2 years ago Thanks - I think the next step should be for editors to look at this and make sure we think there is enough difference from the previous publication before we start a review. This should take a week or two.
danielskatz
commented
2 years ago @editorialbot query scope
editorialbot
commented
2 years ago Submission flagged for editorial review.
arfon
commented
2 years ago @pradeeban, thanks for your submission to JOSS. I've given your earlier paper from March this year (CONTROL-CORE: A Framework for Simulation and Design of Closed-Loop Peripheral Neuromodulation Control Systems) a quick review and it looks like this submission here would be about broadly speaking the same work (i.e., not allowed as a dual publication).
Could you help me understand exactly what the code changes are to your framework since the publication in March this year? Linking to diffs on GitHub will help me make a good decision here.
pradeeban
commented
2 years ago Thanks, @arfon, for your consideration and pointers. After discussing with the co-authors, we have decided to withdraw the paper at this time.
arfon
commented
2 years ago @editorialbot withdraw
editorialbot
commented
2 years ago Paper withdrawn.
Submitting author: !--author-handle-->@pradeeban<!--end-author-handle-- (Pradeeban Kathiravelu) Repository: https://github.com/ControlCore-Project/concore/ Branch with paper.md (empty if default branch): Version: 2.0.1 Editor: Pending Reviewers: Pending Managing EiC: Daniel S. Katz
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@pradeeban if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).
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