[PRE REVIEW]: FuseMedML: a framework for accelerated discovery in machine learning based biomedicine

[editorialbot]

Submitting author: !--author-handle-->@alex-golts<!--end-author-handle-- (Alex Golts) Repository: https://github.com/BiomedSciAI/fuse-med-ml Branch with paper.md (empty if default branch): joss_paper Version: 0.2.8 Editor: !--editor-->@jmschrei<!--end-editor-- Reviewers: @anupamajha1, @suragnair Managing EiC: Kevin M. Moerman

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Author instructions

Thanks for submitting your paper to JOSS @alex-golts. Currently, there isn't a JOSS editor assigned to your paper.

@alex-golts if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

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[editorialbot]

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[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.88  T=1.07 s (220.4 files/s, 83389.5 lines/s)
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Language                     files          blank        comment           code
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Python                         193           4330           6493          15333
Markdown                        24            492              0           1457
Jupyter Notebook                 3              0           1134            502
TeX                              1             19              0            142
YAML                             6             11             10            126
Bourne Shell                     4             33             22            118
INI                              1             14              0             92
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SUM:                           235           4900           7659          76363
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gitinspector failed to run statistical information for the repository

[editorialbot]

Wordcount for paper.md is 1076

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1117/12.2609385 is OK
- 10.1117/12.2613169 is OK
- 10.3390/cancers14163848 is OK
- 10.1148/radiol.220027 is OK

MISSING DOIs

- 10.1007/978-3-030-87592-3_4 may be a valid DOI for title: A Glimpse into the Future: Disease Progression Simulation for Breast Cancer in Mammograms
- 10.1007/978-3-030-87589-3_29 may be a valid DOI for title: Pre-biopsy Multi-class Classification of Breast Lesion Pathology in Mammograms

INVALID DOIs

- None

[Kevin-Mattheus-Moerman]

@editorialbot invite @jmschrei as editor

[editorialbot]

Invitation to edit this submission sent!

[Kevin-Mattheus-Moerman]

@jmschrei this sounds like your cup of tea :tea:, are you able to help edit this one? Thanks

[Kevin-Mattheus-Moerman]

@alex-golts thanks for this submission to JOSS. I am the AEiC for this track and have started looking for a handling editor. While we are waiting for an editor to pick this up, please work on the following:

• [x] check those potentially missing DOI's :point_up: , you can call @editorialbot check references to check them again, and use @editorialbot generate pdf to update the paper draft.
• [x] Can you add the city to your affiliation?

[jmschrei]

@editorialbot assign me as editor

[editorialbot]

Assigned! @jmschrei is now the editor

[jmschrei]

I'll start finding reviewers after those two issues are resolved.

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1117/12.2609385 is OK
- 10.1117/12.2613169 is OK
- 10.3390/cancers14163848 is OK
- 10.1007/978-3-030-87592-3_4 is OK
- 10.1007/978-3-030-87589-3_29 is OK
- 10.1007/978-3-030-98385-7_14 is OK
- 10.1148/radiol.220027 is OK

MISSING DOIs

- None

INVALID DOIs

- None

[alex-golts]

@editorialbot check references

[alex-golts]

@editorialbot generate pdf

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1117/12.2609385 is OK
- 10.1117/12.2613169 is OK
- 10.3390/cancers14163848 is OK
- 10.1007/978-3-030-87592-3_4 is OK
- 10.1007/978-3-030-87589-3_29 is OK
- 10.1007/978-3-030-98385-7_14 is OK
- 10.1148/radiol.220027 is OK

MISSING DOIs

- None

INVALID DOIs

- None

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[alex-golts]

@alex-golts thanks for this submission to JOSS. I am the AEiC for this track and have started looking for a handling editor. While we are waiting for an editor to pick this up, please work on the following:

• [x] check those potentially missing DOI's ☝️ , you can call @editorialbot check references to check them again, and use @editorialbot generate pdf to update the paper draft.
• [x] Can you add the city to your affiliation?

done, thank you!

[Kevin-Mattheus-Moerman]

@jmschrei looks good to me now.

[jmschrei]

@editorialbot add anupamajha1 as reviewer

[editorialbot]

I can't add that reviewer: anupamajha1 is not a username

[jmschrei]

@editorialbot add @anupamajha1 as reviewer

[editorialbot]

@anupamajha1 added to the reviewers list!

[jmschrei]

@editorialbot add @suragnair as reviewer

[editorialbot]

@suragnair added to the reviewers list!

[jmschrei]

@editorialbot start review

[editorialbot]

OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/4943.