Closed editorialbot closed 11 months ago
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Software report:
github.com/AlDanial/cloc v 1.88 T=0.09 s (667.9 files/s, 74431.8 lines/s)
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Python 21 876 1707 2433
XML 1 0 0 463
YAML 14 59 120 380
Markdown 10 99 1 297
TeX 1 13 0 201
reStructuredText 8 57 75 57
Bourne Shell 3 8 10 43
JSON 2 5 0 42
DOS Batch 1 8 1 27
make 1 4 6 10
Dockerfile 1 4 12 3
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SUM: 63 1133 1932 3956
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gitinspector failed to run statistical information for the repository
Wordcount for paper.md
is 1255
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.1021/acs.jcim.8b00989 is OK
- 10.1093/bioinformatics/btx789 is OK
- 10.1063/5.0006002 is OK
- 10.1002/jcc.21787 is OK
- 10.25080/Majora-629e541a-00e is OK
- 10.1002/jcc.23753 is OK
- 10.1002/wcms.1452 is OK
- 10.6084/M9.FIGSHARE.17156018.V1 is OK
- 10.1002/wcms.84 is OK
- 10.1021/bk-2007-0958 is OK
- 10.1002/9780470399545.ch1 is OK
- 10.1016/j.bpj.2015.08.015 is OK
- 10.6084/m9.figshare.20520726.v1 is OK
MISSING DOIs
- None
INVALID DOIs
- None
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
Possible reviewers: tluchko, FoleyLab, cadalyjr
@editorialbot invite @jarvist as editor
Invitation to edit this submission sent!
@editorialbot assign @jarvist as editor
Perfect fit to my area! Thank you for the reviewer suggestions @armcdona Ashley.
Assigned! @jarvist is now the editor
@jarvist hope you are doing well. Thanks for editing this one. Are you able to recruit reviewers here? Let me know if you need help.
Suggestions of reviewers would be very well received! There's relatively few people in SAPT, and your code seems quite a particular application to MD.
On Thu, 23 Mar 2023 at 09:42, Kevin Mattheus Moerman < @.***> wrote:
@jarvist https://github.com/jarvist hope you are doing well. Thanks for editing this one. Are you able to recruit reviewers here? Let me know if you need help.
— Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/5141#issuecomment-1480879779, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAAUHJFNVGNGT2TFBDSW6CDW5QLKFANCNFSM6AAAAAAUXDD5H4 . You are receiving this because you were mentioned.Message ID: @.***>
@armcdona see the request from the editor ☝️ @jarvist. Do you think you can help suggest some potential reviewers? If you have some in mind, please mention them here but leave out the @
symbol, so they are not tagged. Thanks!
@jarvist any luck finding reviewers yourself?
@jarvist :wave:
@editorialbot generate pdf
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
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⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before before considering asking the reviewers of these papers to review again for JOSS.
@armcdona – my apologies it has taken so long to get this submission moving. Can you confirm you're still interested in pursuing this submission with JOSS?
Yes, we would like to continue with the submission. My suggested reviewers were provided above in the message from 10 February 2023.
Thanks for confirming. I'll take this one on @Kevin-Mattheus-Moerman @jarvist.
@editorialbot assign me as editor
Assigned! @arfon is now the editor
@tluchko, @FoleyLab,@cadalyjr @lohedges @symmy596 @hmacdope @lscalfi – :wave: would any of you be willing to review this submission for JOSS? The submission under consideration isMD-SAPT: Python Based Toolkit for Running Symmetry Adapted Perturbation Theory Calculations on Molecular Dynamics Trajectories – https://github.com/calpolyccg/MDSAPT
The review process at JOSS is unique: it takes place in a GitHub issue, is open, and author-reviewer-editor conversations are encouraged. You can learn more about the process in these guidelines: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html
Based on your experience, we think you might be able to provide a great review of this submission. Please let me know if you think you can help us out!
Many thanks Arfon
@arfon I will have to excuse myself on the basis of a COI, as I am an MDAnalysis core-developer (creators of the MDAKit ecosystem, which this package is a member of :smile: ), and have worked with Alia (the first author) in an open source capacity as a member of our dev community a few times. I believe this falls under the COI policy but you can correct me if I am wrong. :+1:
Got it. Thanks @hmacdope – I think it's best to avoid that conflict if we can yes. If you have any other folks you would recommend as potential reviewers, please let me know!
@wiederm expressed some interest :+1: He may need to sign up to be a reviewer before I can ping him. I can't spell.
:wave: @wiederm – would you be willing to review this submission for JOSS? The submission under consideration isMD-SAPT: Python Based Toolkit for Running Symmetry Adapted Perturbation Theory Calculations on Molecular Dynamics Trajectories – https://github.com/calpolyccg/MDSAPT
The review process at JOSS is unique: it takes place in a GitHub issue, is open, and author-reviewer-editor conversations are encouraged. You can learn more about the process in these guidelines: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html
Based on your experience, we think you might be able to provide a great review of this submission. Please let me know if you think you can help us out!
Many thanks Arfon
Hi @arfon and @hmacdope , happy to review this manuscript!
Amazing, thanks @wiederm! I'll wait for a second reviewer to accept before opening the main review issue. Hopefully this won't take more than a couple of days.
@afron, I'm sorry but I can't. I'm over committed right now and wouldn't be able to complete the review in a timely manner.
I also don't have the bandwidth right now, I'm afraid. Thanks for the consideration.
@tluchko @lohedges – are there any people you could recommend that might be able to contribute a review?
@CarvFS would be a good choice. He is a postdoc in my group, if that matters.
👋 @CarvFS – would you be willing to review this submission for JOSS? The submission under consideration ishttps://github.com/openjournals/joss-reviews/issues/5141 – https://github.com/calpolyccg/MDSAPT
The review process at JOSS is unique: it takes place in a GitHub issue, is open, and author-reviewer-editor conversations are encouraged. You can learn more about the process in these guidelines: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html
Based on your experience, we think you might be able to provide a great review of this submission. Please let me know if you think you can help us out!
Many thanks Arfon
Hello Arfon!
I would be delighted to review this submission! I will take a look at the submission and guidelines to review it!
Thank you very much! Felipe Silva Carvalho
From: Arfon Smith @.> Sent: Sunday, October 8, 2023 12:25 AM To: openjournals/joss-reviews @.> Cc: Felipe_SC @.>; Mention @.> Subject: Re: [openjournals/joss-reviews] [PRE REVIEW]: MD-SAPT: Python Based Toolkit for Running Symmetry Adapted Perturbation Theory Calculations on Molecular Dynamics Trajectories (Issue #5141)
👋 @CarvFShttps://github.com/CarvFS – would you be willing to review this submission for JOSS? The submission under consideration ishttps://github.com//issues/5141https://github.com/openjournals/joss-reviews/issues/5141 – https://github.com/calpolyccg/MDSAPT
The review process at JOSS is unique: it takes place in a GitHub issue, is open, and author-reviewer-editor conversations are encouraged. You can learn more about the process in these guidelines: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html
Based on your experience, we think you might be able to provide a great review of this submission. Please let me know if you think you can help us out!
Many thanks Arfon
— Reply to this email directly, view it on GitHubhttps://github.com/openjournals/joss-reviews/issues/5141#issuecomment-1751947089, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AX6EO3YA4WFMHZ6AYT2HM7TX6JIOVAVCNFSM6AAAAAAUXDD5H6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTONJRHE2DOMBYHE. You are receiving this because you were mentioned.Message ID: @.***>
@editorialbot add @wiederm as reviewer
@wiederm added to the reviewers list!
@editorialbot add @CarvFS as reviewer
@CarvFS added to the reviewers list!
@editorialbot start review
OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/5931.
@wiederm, @CarvFS, @armcdona – see you over in #5931 where the actual review will take place.
Submitting author: !--author-handle-->@armcdona<!--end-author-handle-- (Ashley Ringer McDonald) Repository: https://github.com/calpolyccg/MDSAPT Branch with paper.md (empty if default branch): JOSS_Pub Version: v2.0 Editor: !--editor-->@arfon<!--end-editor-- Reviewers: @wiederm, @CarvFS Managing EiC: Kevin M. Moerman
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