Closed editorialbot closed 1 year ago
Hello humans, I'm @editorialbot, a robot that can help you with some common editorial tasks.
For a list of things I can do to help you, just type:
@editorialbot commands
For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:
@editorialbot generate pdf
Software report:
github.com/AlDanial/cloc v 1.88 T=0.31 s (367.9 files/s, 124343.8 lines/s)
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Language files blank comment code
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Python 80 6016 10046 19067
SVG 3 0 21 1737
reStructuredText 19 279 259 519
TeX 2 38 0 343
Markdown 4 55 0 211
DOS Batch 1 23 1 166
YAML 2 4 4 37
Bourne Shell 3 3 3 15
make 1 4 7 9
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SUM: 115 6422 10341 22104
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gitinspector failed to run statistical information for the repository
Wordcount for paper.md
is 1782
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.2514/6.2010-9231 is OK
- 10.2514/6.2022-0004 is OK
- 10.2514/6.2013-3073 is OK
- 10.1145/15886.15903 is OK
- 10.2514/1.29958 is OK
- 10.1007/s00158-019-02211-z is OK
- 10.2514/1.C032150 is OK
- 10.2514/1.J052255 is OK
- 10.2514/2.1391 is OK
- 10.21105/joss.02564 is OK
- 10.2514/6.2021-1132 is OK
- 10.2514/6.2021-3032 is OK
- 10.2514/1.j053813 is OK
- 10.2514/6.2022-3931 is OK
- 10.1145/838250.838251 is OK
- 10.2514/1.J056550 is OK
- 10.1007/s00366-020-01247-w is OK
- 10.2514/6.2022-2177 is OK
- 10.1016/j.oceaneng.2022.112051 is OK
- 10.2514/1.C036216 is OK
- 10.1016/j.compstruct.2021.113937 is OK
- 10.2514/6.2022-1289 is OK
- 10.5194/wes-4-163-2019 is OK
- 10.2514/6.2021-1132 is OK
- 10.2514/1.C036103 is OK
- 10.1017/9781108980647 is OK
- 10.2514/3.58379 is OK
- 10.2514/1.C032491 is OK
- 10.2514/1.J058366 is OK
- 10.2514/6.2023-0726 is OK
- 10.1016/j.actaastro.2018.02.011 is OK
- 10.2514/1.J057294 is OK
MISSING DOIs
- None
INVALID DOIs
- None
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
π @drvinceknight - how is this review coming along? I can't tell if anything has happened since it started.
@danielskatz This is a very powerful package for the airplane outer model line design, which enables a high-fidelity MDAO study. I have followed this optimization framework for a while. I have no problem with the manuscript just a minor question about the claim given in Line 54, βDesign variables formulated from groupings of FFD control points often exhibit ill conditioningβ, do you have any relevant reference to support this, or was it studied in Wu et al. 2022?
The manuscript has covered relevant information and meets the JOSS criteria, https://joss.readthedocs.io/en/latest/review_criteria.html. Good work!
@zhaowei0566 would you be able to complete your review checklist please?
@editorialbot generate my checklist
Likewise, @HaoZeke if you could let me know how the review is going that would be appreciated.
@editorialbot generate pdf
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
just a minor question about the claim given in Line 54, βDesign variables formulated from groupings of FFD control points often exhibit ill conditioningβ, do you have any relevant reference to support this, or was it studied in Wu et al. 2022?
This was studied in Wu et al. 2022. I moved the reference to clarify this @zhaowei0566.
Thanks, @hajdik, I have no further question.
Thanks @zhaowei0566, can I double check that all the points in your checklist are now complete?
@drvinceknight Yes, I have completed the checklist.
Great, thanks @zhaowei0566.
@editorialbot check references
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.2514/6.2010-9231 is OK
- 10.2514/6.2022-0004 is OK
- 10.2514/6.2013-3073 is OK
- 10.1145/15886.15903 is OK
- 10.2514/1.29958 is OK
- 10.1007/s00158-019-02211-z is OK
- 10.2514/1.C032150 is OK
- 10.2514/1.J052255 is OK
- 10.2514/2.1391 is OK
- 10.21105/joss.02564 is OK
- 10.2514/6.2021-1132 is OK
- 10.2514/6.2021-3032 is OK
- 10.2514/1.j053813 is OK
- 10.2514/6.2022-3931 is OK
- 10.1145/838250.838251 is OK
- 10.2514/1.J056550 is OK
- 10.1007/s00366-020-01247-w is OK
- 10.2514/6.2022-2177 is OK
- 10.1016/j.oceaneng.2022.112051 is OK
- 10.2514/1.C036216 is OK
- 10.1016/j.compstruct.2021.113937 is OK
- 10.2514/6.2022-1289 is OK
- 10.5194/wes-4-163-2019 is OK
- 10.2514/6.2021-1132 is OK
- 10.2514/1.C036103 is OK
- 10.1017/9781108980647 is OK
- 10.2514/3.58379 is OK
- 10.2514/1.C032491 is OK
- 10.2514/1.J058366 is OK
- 10.2514/6.2023-0726 is OK
- 10.1016/j.actaastro.2018.02.011 is OK
- 10.2514/1.J057294 is OK
MISSING DOIs
- None
INVALID DOIs
- None
@editorialbot generate pdf
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
This looks good to me. Could you make a tagged release and archive, and report the version number and archive DOI in the review thread. Please make sure the archive deposit has the correct metadata (title and author list) which must match the paper.
Hi @drvinceknight, we have released a version which is archived on zenodo.
version number: v1.13.0
DOI: 10.5281/zenodo.8027706
The paper branch has also changed to main
now that we have merged mdolab/pygeo#203.
Please let us know if there's anything else you need.
@drvinceknight is there anything else you need from us?
@editorialbot set main as branch
Done! branch is now main
@editorialbot generate pdf
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
Thanks for your patience, taking care of this now.
@editorialbot set 10.5281/zenodo.8027706 as archive
Done! archive is now 10.5281/zenodo.8027706
@editorialbot set v1.13.0 as version
Done! version is now v1.13.0
@editorialbot recommend-accept
Attempting dry run of processing paper acceptance...
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.2514/6.2010-9231 is OK
- 10.2514/6.2022-0004 is OK
- 10.2514/6.2013-3073 is OK
- 10.1145/15886.15903 is OK
- 10.2514/1.29958 is OK
- 10.1007/s00158-019-02211-z is OK
- 10.2514/1.C032150 is OK
- 10.2514/1.J052255 is OK
- 10.2514/2.1391 is OK
- 10.21105/joss.02564 is OK
- 10.2514/6.2021-1132 is OK
- 10.2514/6.2021-3032 is OK
- 10.2514/1.j053813 is OK
- 10.2514/6.2022-3931 is OK
- 10.1145/838250.838251 is OK
- 10.2514/1.J056550 is OK
- 10.1007/s00366-020-01247-w is OK
- 10.2514/6.2022-2177 is OK
- 10.1016/j.oceaneng.2022.112051 is OK
- 10.2514/1.C036216 is OK
- 10.1016/j.compstruct.2021.113937 is OK
- 10.2514/6.2022-1289 is OK
- 10.5194/wes-4-163-2019 is OK
- 10.2514/6.2021-1132 is OK
- 10.2514/1.C036103 is OK
- 10.1017/9781108980647 is OK
- 10.2514/3.58379 is OK
- 10.2514/1.C032491 is OK
- 10.2514/1.J058366 is OK
- 10.2514/6.2023-0726 is OK
- 10.1016/j.actaastro.2018.02.011 is OK
- 10.2514/1.J057294 is OK
MISSING DOIs
- None
INVALID DOIs
- None
:warning: Error preparing paper acceptance. The generated XML metadata file is invalid.
ID ref-Brelje2021a already defined
paper.bib has been updated to remove the duplicate citation.
@editorialbot recommend-accept
Attempting dry run of processing paper acceptance...
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.2514/6.2010-9231 is OK
- 10.2514/6.2022-0004 is OK
- 10.2514/6.2013-3073 is OK
- 10.1145/15886.15903 is OK
- 10.2514/1.29958 is OK
- 10.1007/s00158-019-02211-z is OK
- 10.2514/1.C032150 is OK
- 10.2514/1.J052255 is OK
- 10.2514/2.1391 is OK
- 10.21105/joss.02564 is OK
- 10.2514/6.2021-1132 is OK
- 10.2514/6.2021-3032 is OK
- 10.2514/1.j053813 is OK
- 10.2514/6.2022-3931 is OK
- 10.1145/838250.838251 is OK
- 10.2514/1.J056550 is OK
- 10.1007/s00366-020-01247-w is OK
- 10.2514/6.2022-2177 is OK
- 10.1016/j.oceaneng.2022.112051 is OK
- 10.2514/1.C036216 is OK
- 10.1016/j.compstruct.2021.113937 is OK
- 10.2514/6.2022-1289 is OK
- 10.5194/wes-4-163-2019 is OK
- 10.2514/1.C036103 is OK
- 10.1017/9781108980647 is OK
- 10.2514/3.58379 is OK
- 10.2514/1.C032491 is OK
- 10.2514/1.J058366 is OK
- 10.2514/6.2023-0726 is OK
- 10.1016/j.actaastro.2018.02.011 is OK
- 10.2514/1.J057294 is OK
MISSING DOIs
- None
INVALID DOIs
- None
:wave: @openjournals/csism-eics, this paper is ready to be accepted and published.
Check final proof :point_right::page_facing_up: Download article
If the paper PDF and the deposit XML files look good in https://github.com/openjournals/joss-papers/pull/4410, then you can now move forward with accepting the submission by compiling again with the command @editorialbot accept
@hajdik - I'm now proofreading this paper to get ready to process it further towards publication. While I do so, I notice that the zenodo archive doesn't have any ORCIDs for the authors, while the paper does. If you want to, you can edit the Zenodo metadata to add ORCIDs. This is up to you to decide.
@editorialbot accept
This all looks good, so I'm going forward with accepting it (the zenodo metadata can still be changed, if you want, as it's independent)
Doing it live! Attempting automated processing of paper acceptance...
Ensure proper citation by uploading a plain text CITATION.cff file to the default branch of your repository.
If using GitHub, a Cite this repository menu will appear in the About section, containing both APA and BibTeX formats. When exported to Zotero using a browser plugin, Zotero will automatically create an entry using the information contained in the .cff file.
You can copy the contents for your CITATION.cff file here:
``` cff-version: "1.2.0" authors: - family-names: Hajdik given-names: Hannah M. orcid: "https://orcid.org/0000-0002-5103-7159" - family-names: Yildirim given-names: Anil orcid: "https://orcid.org/0000-0002-1814-9191" - family-names: Wu given-names: Neil orcid: "https://orcid.org/0000-0001-8856-9661" - family-names: Brelje given-names: Benjamin J. orcid: "https://orcid.org/0000-0002-9819-3028" - family-names: Seraj given-names: Sabet orcid: "https://orcid.org/0000-0002-7364-0071" - family-names: Mangano given-names: Marco orcid: "https://orcid.org/0000-0001-8495-3578" - family-names: Anibal given-names: Joshua L. orcid: "https://orcid.org/0000-0002-7795-2523" - family-names: Jonsson given-names: Eirikur orcid: "https://orcid.org/0000-0002-5166-3889" - family-names: Adler given-names: Eytan J. orcid: "https://orcid.org/0000-0002-8716-1805" - family-names: Mader given-names: Charles A. orcid: "https://orcid.org/0000-0002-2744-1151" - family-names: Kenway given-names: Gaetan K. W. orcid: "https://orcid.org/0000-0003-1352-5458" - family-names: Martins given-names: Joaquim R. R. A. orcid: "https://orcid.org/0000-0003-2143-1478" doi: 10.5281/zenodo.8027706 message: If you use this software, please cite our article in the Journal of Open Source Software. preferred-citation: authors: - family-names: Hajdik given-names: Hannah M. orcid: "https://orcid.org/0000-0002-5103-7159" - family-names: Yildirim given-names: Anil orcid: "https://orcid.org/0000-0002-1814-9191" - family-names: Wu given-names: Neil orcid: "https://orcid.org/0000-0001-8856-9661" - family-names: Brelje given-names: Benjamin J. orcid: "https://orcid.org/0000-0002-9819-3028" - family-names: Seraj given-names: Sabet orcid: "https://orcid.org/0000-0002-7364-0071" - family-names: Mangano given-names: Marco orcid: "https://orcid.org/0000-0001-8495-3578" - family-names: Anibal given-names: Joshua L. orcid: "https://orcid.org/0000-0002-7795-2523" - family-names: Jonsson given-names: Eirikur orcid: "https://orcid.org/0000-0002-5166-3889" - family-names: Adler given-names: Eytan J. orcid: "https://orcid.org/0000-0002-8716-1805" - family-names: Mader given-names: Charles A. orcid: "https://orcid.org/0000-0002-2744-1151" - family-names: Kenway given-names: Gaetan K. W. orcid: "https://orcid.org/0000-0003-1352-5458" - family-names: Martins given-names: Joaquim R. R. A. orcid: "https://orcid.org/0000-0003-2143-1478" date-published: 2023-07-19 doi: 10.21105/joss.05319 issn: 2475-9066 issue: 87 journal: Journal of Open Source Software publisher: name: Open Journals start: 5319 title: "pyGeo: A geometry package for multidisciplinary design optimization" type: article url: "https://joss.theoj.org/papers/10.21105/joss.05319" volume: 8 title: "pyGeo: A geometry package for multidisciplinary design optimization" ```
If the repository is not hosted on GitHub, a .cff file can still be uploaded to set your preferred citation. Users will be able to manually copy and paste the citation.
πππ π Toot for this paper π πππ
π¨π¨π¨ THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! π¨π¨π¨
Here's what you must now do:
Any issues? Notify your editorial technical team...
Congratulations to @hajdik (Hannah Hajdik) and co-authors on your publication!!
And thanks to @HaoZeke and @zhaowei0566 for reviewing, and to @drvinceknight for editing! We couldn't do this without your voluntary efforts
:tada::tada::tada: Congratulations on your paper acceptance! :tada::tada::tada:
If you would like to include a link to your paper from your README use the following code snippets:
Markdown:
[![DOI](https://joss.theoj.org/papers/10.21105/joss.05319/status.svg)](https://doi.org/10.21105/joss.05319)
HTML:
<a style="border-width:0" href="https://doi.org/10.21105/joss.05319">
<img src="https://joss.theoj.org/papers/10.21105/joss.05319/status.svg" alt="DOI badge" >
</a>
reStructuredText:
.. image:: https://joss.theoj.org/papers/10.21105/joss.05319/status.svg
:target: https://doi.org/10.21105/joss.05319
This is how it will look in your documentation:
We need your help!
The Journal of Open Source Software is a community-run journal and relies upon volunteer effort. If you'd like to support us please consider doing either one (or both) of the the following:
π Paper updated!
New PDF and metadata files :point_right: https://github.com/openjournals/joss-papers/pull/5322
Submitting author: !--author-handle-->@hajdik<!--end-author-handle-- (Hannah Hajdik) Repository: https://github.com/mdolab/pygeo Branch with paper.md (empty if default branch): main Version: v1.13.0 Editor: !--editor-->@drvinceknight<!--end-editor-- Reviewers: @HaoZeke, @zhaowei0566 Archive: 10.5281/zenodo.8027706
Status
Status badge code:
Reviewers and authors:
Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)
Reviewer instructions & questions
@HaoZeke & @zhaowei0566, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review. First of all you need to run this command in a separate comment to create the checklist:
The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @drvinceknight know.
β¨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest β¨
Checklists
π Checklist for @zhaowei0566