[REVIEW]: SleepECG: a Python package for sleep staging based on heart rate

[editorialbot]

Submitting author: !--author-handle-->@cbrnr<!--end-author-handle-- (Clemens Brunner) Repository: https://github.com/cbrnr/sleepecg Branch with paper.md (empty if default branch): joss Version: v0.5.5 Editor: !--editor-->@emdupre<!--end-editor-- Reviewers: @tompollard, @richrobe, @peterakirk Archive: 10.5281/zenodo.7993717

Status

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Markdown: [![status](https://joss.theoj.org/papers/842b3838fa2f0f4f735cbd25de8508bb/status.svg)](https://joss.theoj.org/papers/842b3838fa2f0f4f735cbd25de8508bb)

Reviewers and authors:

Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)

Reviewer instructions & questions

@tompollard & @richrobe & @peterakirk, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review. First of all you need to run this command in a separate comment to create the checklist:

@editorialbot generate my checklist

The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @emdupre know.

✨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest ✨

Checklists

📝 Checklist for @richrobe

📝 Checklist for @peterakirk

📝 Checklist for @tompollard

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[emdupre]

@editorialbot check references

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1111/j.1469-8986.1966.tb02650.x is OK
- 10.1109/TBME.1985.325532 is OK
- 10.1161/01.CIR.93.5.1043 is OK
- 10.5664/jcsm.26814 is OK
- 10.3389/fpubh.2017.00258 is OK
- 10.1145/3397325 is OK
- 10.5281/zenodo.7987192 is OK
- 10.1093/jamia/ocy064 is OK
- 10.5665/sleep.4732 is OK
- 10.1093/sleep/20.12.1077 is OK
- 10.1046/j.1440-1819.1999.00527.x is OK

MISSING DOIs

- None

INVALID DOIs

- None

[emdupre]

Thank you, @cbrnr !

I'm now happy to recommend SleepECG for publication 🚀 Congratulations on this (impressive !) work. And thank you to @tompollard, @richrobe, and @peterakirk for your time and expertise in reviewing this submission !

[emdupre]

@editorialbot recommend-accept

[editorialbot]

Attempting dry run of processing paper acceptance...

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1111/j.1469-8986.1966.tb02650.x is OK
- 10.1109/TBME.1985.325532 is OK
- 10.1161/01.CIR.93.5.1043 is OK
- 10.5664/jcsm.26814 is OK
- 10.3389/fpubh.2017.00258 is OK
- 10.1145/3397325 is OK
- 10.5281/zenodo.7987192 is OK
- 10.1093/jamia/ocy064 is OK
- 10.5665/sleep.4732 is OK
- 10.1093/sleep/20.12.1077 is OK
- 10.1046/j.1440-1819.1999.00527.x is OK

MISSING DOIs

- None

INVALID DOIs

- None

[editorialbot]

:wave: @openjournals/bcm-eics, this paper is ready to be accepted and published.

Check final proof :point_right::page_facing_up: Download article

If the paper PDF and the deposit XML files look good in https://github.com/openjournals/joss-papers/pull/4286, then you can now move forward with accepting the submission by compiling again with the command @editorialbot accept

[cbrnr]

Thank you all, this was a wonderful review process with super helpful comments! 🚀

[cbrnr]

(Not sure if you needed my feedback, but the final proof looks good!)

[emdupre]

Thank you for confirming, @cbrnr !

We're now waiting on JOSS EiC availability ; I will follow-up with that team if we don't hear back in the next couple of days, just to make sure this doesn't slip through the cracks !

[Kevin-Mattheus-Moerman]

@cbrnr @emdupre I have checked the archive, the repository, this review, and the paper. And all seems in order. I will now proceed to process this work for acceptance in JOSS.

[Kevin-Mattheus-Moerman]

@editorialbot accept

[editorialbot]

Doing it live! Attempting automated processing of paper acceptance...

[editorialbot]

Ensure proper citation by uploading a plain text CITATION.cff file to the default branch of your repository.

If using GitHub, a Cite this repository menu will appear in the About section, containing both APA and BibTeX formats. When exported to Zotero using a browser plugin, Zotero will automatically create an entry using the information contained in the .cff file.

You can copy the contents for your CITATION.cff file here:

CITATION.cff

``` cff-version: "1.2.0" authors: - family-names: Brunner given-names: Clemens orcid: "https://orcid.org/0000-0002-6030-2233" - family-names: Hofer given-names: Florian orcid: "https://orcid.org/0009-0009-0449-1197" doi: 10.5281/zenodo.7993717 message: If you use this software, please cite our article in the Journal of Open Source Software. preferred-citation: authors: - family-names: Brunner given-names: Clemens orcid: "https://orcid.org/0000-0002-6030-2233" - family-names: Hofer given-names: Florian orcid: "https://orcid.org/0009-0009-0449-1197" date-published: 2023-06-09 doi: 10.21105/joss.05411 issn: 2475-9066 issue: 86 journal: Journal of Open Source Software publisher: name: Open Journals start: 5411 title: "SleepECG: a Python package for sleep staging based on heart rate" type: article url: "https://joss.theoj.org/papers/10.21105/joss.05411" volume: 8 title: "SleepECG: a Python package for sleep staging based on heart rate" ```

If the repository is not hosted on GitHub, a .cff file can still be uploaded to set your preferred citation. Users will be able to manually copy and paste the citation.

Find more information on .cff files here and here.

[editorialbot]

🐦🐦🐦 👉 Tweet for this paper 👈 🐦🐦🐦

[editorialbot]

🐘🐘🐘 👉 Toot for this paper 👈 🐘🐘🐘

[editorialbot]

🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! 🚨🚨🚨

Here's what you must now do:

0. Check final PDF and Crossref metadata that was deposited :point_right: https://github.com/openjournals/joss-papers/pull/4292
1. Wait a couple of minutes, then verify that the paper DOI resolves https://doi.org/10.21105/joss.05411
2. If everything looks good, then close this review issue.
3. Party like you just published a paper! 🎉🌈🦄💃👻🤘

Any issues? Notify your editorial technical team...

[Kevin-Mattheus-Moerman]

@cbrnr congratulations on this publication in JOSS!

@emdupre thank you for editing!

And a special thanks to the reviewers: @tompollard, @richrobe, @peterakirk !!

[editorialbot]

:tada::tada::tada: Congratulations on your paper acceptance! :tada::tada::tada:

If you would like to include a link to your paper from your README use the following code snippets:

Markdown:
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HTML:
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  <img src="https://joss.theoj.org/papers/10.21105/joss.05411/status.svg" alt="DOI badge" >
</a>

reStructuredText:
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   :target: https://doi.org/10.21105/joss.05411

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