[REVIEW]: `SuperNOVA`: Semi-Parametric Identification and Estimation of Interaction and Effect Modification in Mixed Exposures using Stochastic Interventions in `R`

[editorialbot]

Submitting author: !--author-handle-->@blind-contours<!--end-author-handle-- (David McCoy) Repository: https://github.com/blind-contours/SuperNOVA Branch with paper.md (empty if default branch): main Version: v1.0.0-JOSS Editor: !--editor-->@csoneson<!--end-editor-- Reviewers: @mhu48, @lucasmiranda42 Archive: 10.5281/zenodo.10038794

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Markdown: [![status](https://joss.theoj.org/papers/70888201f8453113ab2a8d287b78c0f6/status.svg)](https://joss.theoj.org/papers/70888201f8453113ab2a8d287b78c0f6)

Reviewers and authors:

Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)

Reviewer instructions & questions

@mhu48 & @lucasmiranda42, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review. First of all you need to run this command in a separate comment to create the checklist:

@editorialbot generate my checklist

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Checklists

📝 Checklist for @mhu48

📝 Checklist for @lucasmiranda42

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1111/rssb.12362 is OK
- 10.5281/zenodo.1342293 is OK
- 10.48550/arXiv.2305.01849 is OK
- 10.1515/ijb-2015-0013 is OK
- 10.1111/j.1541-0420.2011.01685.x is OK

MISSING DOIs

- None

INVALID DOIs

- None

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[csoneson]

@editorialbot set 10.5281/zenodo.10038794 as archive

[editorialbot]

Done! archive is now 10.5281/zenodo.10038794

[csoneson]

@editorialbot set v1.0.0-JOSS as version

[editorialbot]

Done! version is now v1.0.0-JOSS

[csoneson]

Thanks! Final minor detail - it looks like the first and second names of the co-authors are swapped in the Zenodo archive. Once that is fixed I think we are ready to move to the final stage.

[blind-contours]

I believe this is the contributors section on Zenodo - I have all the authors listed as creators so I just removed that section and everything should match now. Let me know if you need anything else.

[csoneson]

Sorry, I was unclear - the author lists match, but I see this in Zenodo:

McCoy, David; Alejandro, Shuler; Alan, Hubbard; Mark, van der Laan

I.e., the first names of your co-authors seem to be interpreted as surnames, and vice versa.

[blind-contours]

Oh yea, my mistake. That's fixed now.

[csoneson]

Great! This looks good - I will hand off to the track AEiC for the last steps.

[csoneson]

@editorialbot recommend-accept

[editorialbot]

Attempting dry run of processing paper acceptance...

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1111/rssb.12362 is OK
- 10.5281/zenodo.1342293 is OK
- 10.48550/arXiv.2305.01849 is OK
- 10.1515/ijb-2015-0013 is OK
- 10.1111/j.1541-0420.2011.01685.x is OK

MISSING DOIs

- None

INVALID DOIs

- None

[editorialbot]

:wave: @openjournals/dsais-eics, this paper is ready to be accepted and published.

Check final proof :point_right::page_facing_up: Download article

If the paper PDF and the deposit XML files look good in https://github.com/openjournals/joss-papers/pull/4749, then you can now move forward with accepting the submission by compiling again with the command @editorialbot accept

[arfon]

@editorialbot accept

[editorialbot]

Doing it live! Attempting automated processing of paper acceptance...

[editorialbot]

Ensure proper citation by uploading a plain text CITATION.cff file to the default branch of your repository.

If using GitHub, a Cite this repository menu will appear in the About section, containing both APA and BibTeX formats. When exported to Zotero using a browser plugin, Zotero will automatically create an entry using the information contained in the .cff file.

You can copy the contents for your CITATION.cff file here:

CITATION.cff

``` cff-version: "1.2.0" authors: - family-names: McCoy given-names: David orcid: "https://orcid.org/0000-0002-5515-6307" - family-names: Schuler given-names: Alejandro orcid: "https://orcid.org/0000-0003-4853-6130" - family-names: Hubbard given-names: Alan orcid: "https://orcid.org/0000-0002-3769-0127" - family-names: Laan given-names: Mark name-particle: van der orcid: "https://orcid.org/0000-0003-1432-5511" doi: 10.5281/zenodo.10038794 message: If you use this software, please cite our article in the Journal of Open Source Software. preferred-citation: authors: - family-names: McCoy given-names: David orcid: "https://orcid.org/0000-0002-5515-6307" - family-names: Schuler given-names: Alejandro orcid: "https://orcid.org/0000-0003-4853-6130" - family-names: Hubbard given-names: Alan orcid: "https://orcid.org/0000-0002-3769-0127" - family-names: Laan given-names: Mark name-particle: van der orcid: "https://orcid.org/0000-0003-1432-5511" date-published: 2023-11-05 doi: 10.21105/joss.05422 issn: 2475-9066 issue: 91 journal: Journal of Open Source Software publisher: name: Open Journals start: 5422 title: "SuperNOVA: Semi-Parametric Identification and Estimation of Interaction and Effect Modification in Mixed Exposures using Stochastic Interventions in R" type: article url: "https://joss.theoj.org/papers/10.21105/joss.05422" volume: 8 title: "`SuperNOVA`: Semi-Parametric Identification and Estimation of Interaction and Effect Modification in Mixed Exposures using Stochastic Interventions in `R`" ```

If the repository is not hosted on GitHub, a .cff file can still be uploaded to set your preferred citation. Users will be able to manually copy and paste the citation.

Find more information on .cff files here and here.

[editorialbot]

🐘🐘🐘 👉 Toot for this paper 👈 🐘🐘🐘

[editorialbot]

🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! 🚨🚨🚨

Here's what you must now do:

0. Check final PDF and Crossref metadata that was deposited :point_right: https://github.com/openjournals/joss-papers/pull/4750
1. Wait five minutes, then verify that the paper DOI resolves https://doi.org/10.21105/joss.05422
2. If everything looks good, then close this review issue.
3. Party like you just published a paper! 🎉🌈🦄💃👻🤘

Any issues? Notify your editorial technical team...

[arfon]

@mhu48, @lucasmiranda42 – many thanks for your reviews here and to @csoneson for editing this submission! JOSS relies upon the volunteer effort of people like you and we simply wouldn't be able to do this without you ✨

@blind-contours – your paper is now accepted and published in JOSS :zap::rocket::boom:

[editorialbot]

:tada::tada::tada: Congratulations on your paper acceptance! :tada::tada::tada:

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