openjournals / joss-reviews

Reviews for the Journal of Open Source Software
Creative Commons Zero v1.0 Universal
703 stars 36 forks source link

[PRE REVIEW]: Pylinac: Image analysis for routine quality assurance in radiotherapy #5980

Closed editorialbot closed 10 months ago

editorialbot commented 10 months ago

Submitting author: !--author-handle-->@jrkerns<!--end-author-handle-- (James Kerns) Repository: https://github.com/jrkerns/pylinac Branch with paper.md (empty if default branch): joss_paper Version: 3.16 Editor: !--editor-->@kellyrowland<!--end-editor-- Reviewers: @ProfLeao, @SimonBiggs Managing EiC: Kevin M. Moerman

Status

status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/fbef391df8cf35d0a374003fc25952b2"><img src="https://joss.theoj.org/papers/fbef391df8cf35d0a374003fc25952b2/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/fbef391df8cf35d0a374003fc25952b2/status.svg)](https://joss.theoj.org/papers/fbef391df8cf35d0a374003fc25952b2)

Author instructions

Thanks for submitting your paper to JOSS @jrkerns. Currently, there isn't a JOSS editor assigned to your paper.

@jrkerns if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSS submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

@editorialbot commands
editorialbot commented 10 months ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf
editorialbot commented 10 months ago
Software report:

github.com/AlDanial/cloc v 1.88  T=0.35 s (384.5 files/s, 162678.1 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          83           5316           7355          29759
reStructuredText                30           3932           3070           6005
YAML                             7             24             21            496
TeX                              1              0              0            374
HTML                             8             64              0            280
DOS Batch                        1             34              2            227
make                             1             30              6            156
SVG                              1              9              0            133
Markdown                         3             40              0            132
TOML                             1              8              1             69
-------------------------------------------------------------------------------
SUM:                           136           9457          10455          37631
-------------------------------------------------------------------------------

gitinspector failed to run statistical information for the repository
editorialbot commented 10 months ago

Wordcount for paper.md is 1012

editorialbot commented 10 months ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 10 months ago

Five most similar historical JOSS papers:

PyMedPhys: A community effort to develop an open, Python-based standard library for medical physics applications Submitting author: @Matthew-Jennings Handling editor: @osorensen (Active) Reviewers: @ProfLeao, @gbaltz Similarity score: 0.8468

PyQMRI: An accelerated Python based Quantitative MRI toolbox Submitting author: @maieroli2010 Handling editor: @Kevin-Mattheus-Moerman (Active) Reviewers: @grlee77, @agahkarakuzu, @DARSakthi Similarity score: 0.8431

PyLithics: A Python package for stone tool analysis Submitting author: @JasonGellis Handling editor: @Nikoleta-v3 (Active) Reviewers: @MichaelHoltonPrice, @steko Similarity score: 0.8415

Pyoints: A Python package for point cloud, voxel and raster processing. Submitting author: @laempy Handling editor: @lheagy (Retired) Reviewers: @kbevers, @scivision Similarity score: 0.8340

The Vascular Modeling Toolkit: A Python Library for the Analysis of Tubular Structures in Medical Images Submitting author: @rlizzo Handling editor: @Kevin-Mattheus-Moerman (Active) Reviewers: @wouterpotters, @brainstorm Similarity score: 0.8312

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before before considering asking the reviewers of these papers to review again for JOSS.

Kevin-Mattheus-Moerman commented 10 months ago

@jrkerns I am the AEiC on this track and here to help with initial steps. I will be looking for a handling editor next. Note however we have a bit of a backlog and many editors are currently preoccupied with other submissions. Hence it may take a bit longer than usual to find a handling editor.

Kevin-Mattheus-Moerman commented 10 months ago

@editorialbot invite @AJQuinn as editor

editorialbot commented 10 months ago

Invitation to edit this submission sent!

Kevin-Mattheus-Moerman commented 10 months ago

@AJQuinn this may be a bit off topic, but do you think you can help edit this one?

kellyrowland commented 10 months ago

@Kevin-Mattheus-Moerman I could edit this if needed.

Kevin-Mattheus-Moerman commented 10 months ago

@editorialbot set @kellyrowland as editor

editorialbot commented 10 months ago

I'm sorry human, I don't understand that. You can see what commands I support by typing:

@editorialbot commands

Kevin-Mattheus-Moerman commented 10 months ago

@editorialbot assign @kellyrowland as editor

editorialbot commented 10 months ago

Assigned! @kellyrowland is now the editor

kellyrowland commented 10 months ago

hi @jrkerns do you have any suggested reviewers for this submission? if not, I can ping some folks from our reviewer list.

jrkerns commented 10 months ago

There are people I can think of but they are co-workers or past co-workers, so I'd assume that's a conflict of interest? Otherwise, no, sorry!

kellyrowland commented 10 months ago

no worries, I'll ping some folks from our volunteers list.

kellyrowland commented 10 months ago

hi @ProfLeao @SimonBiggs 👋 would you be available for and interested in reviewing this JOSS submission?

ProfLeao commented 10 months ago

Yes, I can!

kellyrowland commented 10 months ago

@editorialbot add @ProfLeao to reviewers

editorialbot commented 10 months ago

@ProfLeao added to the reviewers list!

ProfLeao commented 10 months ago

@editorialbot commands

editorialbot commented 10 months ago

Hello @ProfLeao, here are the things you can ask me to do:


# List all available commands
@editorialbot commands

# Get a list of all editors's GitHub handles
@editorialbot list editors

# Check the references of the paper for missing DOIs
@editorialbot check references

# Perform checks on the repository
@editorialbot check repository

# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist

# Set a value for branch
@editorialbot set joss-paper as branch

# Generates the pdf paper
@editorialbot generate pdf

# Generates a LaTeX preprint file
@editorialbot generate preprint

# Get a link to the complete list of reviewers
@editorialbot list reviewers
SimonBiggs commented 10 months ago

Hi @kellyrowland,

I absolutely also can :) (I am also familiar with the library, so can probably review quite quickly)

kellyrowland commented 10 months ago

@editorialbot add @SimonBiggs to reviewers

editorialbot commented 10 months ago

@SimonBiggs added to the reviewers list!

kellyrowland commented 10 months ago

@editorialbot start review

editorialbot commented 10 months ago

OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/6001.