Closed editorialbot closed 6 months ago
Attempting dry run of processing paper acceptance...
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.1007/978-3-030-48478-1_1 is OK
- 10.3390/math10050759 is OK
- 10.1109/hipc53243.2021.00045 is OK
- 10.1109/tvcg.2022.3153895 is OK
- 10.1140/epjds/s13688-020-00231-0 is OK
- 10.1371/journal.pcbi.1011190 is OK
- 10.1016/s0924-6509(09)x7013-3 is OK
- 10.1016/s0924-6509(08)x7007-2 is OK
- 10.1186/s12859-021-04197-2 is OK
- 10.48550/arXiv.2208.03103 is OK
- 10.1093/comnet/cnad019 is OK
- 10.48550/arXiv.2208.06894 is OK
- 10.1007/978-3-030-67318-5_25 is OK
- 10.1137/20M1355896 is OK
- 10.1007/978-3-030-71704-9_1 is OK
- 10.21105/joss.05162 is OK
- 10.1007/978-3-030-25070-6_9 is OK
- 10.1101/2023.09.29.560191 is OK
- 10.5281/zenodo.3509134 is OK
- 10.25080/Majora-92bf1922-00a is OK
MISSING DOIs
- No DOI given, and none found for title: The Stanford GraphBase: a platform for combinatori...
- No DOI given, and none found for title: igraph enables fast and robust network analysis ac...
- No DOI given, and none found for title: The igraph software package for complex network re...
- No DOI given, and none found for title: HyperThesis: Topological Hypothesis Management in ...
- No DOI given, and none found for title: Exploring Network Structure, Dynamics, and Functio...
INVALID DOIs
- None
:wave: @openjournals/csism-eics, this paper is ready to be accepted and published.
Check final proof :point_right::page_facing_up: Download article
If the paper PDF and the deposit XML files look good in https://github.com/openjournals/joss-papers/pull/5099, then you can now move forward with accepting the submission by compiling again with the command @editorialbot accept
@brendapraggastis, @bonicim - sorry, but I see two small changes needed in the paper that were in my PR but didn't make it into the changes you made. Please add a space in this line
In its latest release, HNX 2.0 uses Pandas dataframes[@reback2020pandas;@mckinney-proc-scipy-2010] as its underlying data structure,
so that it becomes
In its latest release, HNX 2.0 uses Pandas dataframes [@reback2020pandas;@mckinney-proc-scipy-2010] as its underlying data structure,
And similarly, in
a statistics package as well as a full suite of hypergraph analysis and visualization tools[@Landry2023].
so that it becomes
a statistics package as well as a full suite of hypergraph analysis and visualization tools [@Landry2023].
@editorialbot generate pdf
@danielskatz New DOI: 10.5281/zenodo.10795225
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
Thanks @bonicim - we actually don't need the paper in the archive, so you didn't need to create a new archive or tag, just to update the .md file. However, I didn't say this clearly. In any case, I'll check again now.
@editorialbot set 10.5281/zenodo.10795225 as archive
Done! archive is now 10.5281/zenodo.10795225
@editorialbot recommend-accept
Attempting dry run of processing paper acceptance...
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.1007/978-3-030-48478-1_1 is OK
- 10.3390/math10050759 is OK
- 10.1109/hipc53243.2021.00045 is OK
- 10.1109/tvcg.2022.3153895 is OK
- 10.1140/epjds/s13688-020-00231-0 is OK
- 10.1371/journal.pcbi.1011190 is OK
- 10.1016/s0924-6509(09)x7013-3 is OK
- 10.1016/s0924-6509(08)x7007-2 is OK
- 10.1186/s12859-021-04197-2 is OK
- 10.48550/arXiv.2208.03103 is OK
- 10.1093/comnet/cnad019 is OK
- 10.48550/arXiv.2208.06894 is OK
- 10.1007/978-3-030-67318-5_25 is OK
- 10.1137/20M1355896 is OK
- 10.1007/978-3-030-71704-9_1 is OK
- 10.21105/joss.05162 is OK
- 10.1007/978-3-030-25070-6_9 is OK
- 10.1101/2023.09.29.560191 is OK
- 10.5281/zenodo.3509134 is OK
- 10.25080/Majora-92bf1922-00a is OK
MISSING DOIs
- No DOI given, and none found for title: The Stanford GraphBase: a platform for combinatori...
- No DOI given, and none found for title: igraph enables fast and robust network analysis ac...
- No DOI given, and none found for title: The igraph software package for complex network re...
- No DOI given, and none found for title: HyperThesis: Topological Hypothesis Management in ...
- No DOI given, and none found for title: Exploring Network Structure, Dynamics, and Functio...
INVALID DOIs
- None
:wave: @openjournals/csism-eics, this paper is ready to be accepted and published.
Check final proof :point_right::page_facing_up: Download article
If the paper PDF and the deposit XML files look good in https://github.com/openjournals/joss-papers/pull/5112, then you can now move forward with accepting the submission by compiling again with the command @editorialbot accept
@editorialbot accept
Doing it live! Attempting automated processing of paper acceptance...
Congratulations to @brendapraggastis (Brenda Praggastis) and @bonicim and co-authors on your publication!!
And thanks to @szhorvat, @IvanIsCoding, and @drj11 for reviewing! JOSS depends on volunteers and we couldn't do this without you
Ensure proper citation by uploading a plain text CITATION.cff file to the default branch of your repository.
If using GitHub, a Cite this repository menu will appear in the About section, containing both APA and BibTeX formats. When exported to Zotero using a browser plugin, Zotero will automatically create an entry using the information contained in the .cff file.
You can copy the contents for your CITATION.cff file here:
``` cff-version: "1.2.0" authors: - family-names: Praggastis given-names: Brenda orcid: "https://orcid.org/0000-0003-1344-0497" - family-names: Aksoy given-names: Sinan orcid: "https://orcid.org/0000-0002-3466-3334" - family-names: Arendt given-names: Dustin orcid: "https://orcid.org/0000-0003-2466-199X" - family-names: Bonicillo given-names: Mark orcid: "https://orcid.org/0009-0003-9764-2180" - family-names: Joslyn given-names: Cliff orcid: "https://orcid.org/0000-0002-5923-5547" - family-names: Purvine given-names: Emilie orcid: "https://orcid.org/0000-0003-2069-5594" - family-names: Shapiro given-names: Madelyn orcid: "https://orcid.org/0000-0002-2786-7056" - family-names: Yun given-names: Ji Young doi: 10.5281/zenodo.10795225 message: If you use this software, please cite our article in the Journal of Open Source Software. preferred-citation: authors: - family-names: Praggastis given-names: Brenda orcid: "https://orcid.org/0000-0003-1344-0497" - family-names: Aksoy given-names: Sinan orcid: "https://orcid.org/0000-0002-3466-3334" - family-names: Arendt given-names: Dustin orcid: "https://orcid.org/0000-0003-2466-199X" - family-names: Bonicillo given-names: Mark orcid: "https://orcid.org/0009-0003-9764-2180" - family-names: Joslyn given-names: Cliff orcid: "https://orcid.org/0000-0002-5923-5547" - family-names: Purvine given-names: Emilie orcid: "https://orcid.org/0000-0003-2069-5594" - family-names: Shapiro given-names: Madelyn orcid: "https://orcid.org/0000-0002-2786-7056" - family-names: Yun given-names: Ji Young date-published: 2024-03-09 doi: 10.21105/joss.06016 issn: 2475-9066 issue: 95 journal: Journal of Open Source Software publisher: name: Open Journals start: 6016 title: "HyperNetX: A Python package for modeling complex network data as hypergraphs" type: article url: "https://joss.theoj.org/papers/10.21105/joss.06016" volume: 9 title: "HyperNetX: A Python package for modeling complex network data as hypergraphs" ```
If the repository is not hosted on GitHub, a .cff file can still be uploaded to set your preferred citation. Users will be able to manually copy and paste the citation.
πππ π Toot for this paper π πππ
π¨π¨π¨ THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! π¨π¨π¨
Here's what you must now do:
Any issues? Notify your editorial technical team...
Thanks for getting us through the process! @danielskatz @szhorvat @drj11 @IvanIsCoding and of course Mark @bonicim .
Submitting author: !--author-handle-->@brendapraggastis<!--end-author-handle-- (Brenda Praggastis) Repository: https://github.com/pnnl/HyperNetX Branch with paper.md (empty if default branch): paper Version: v2.2.0p Editor: !--editor-->@danielskatz<!--end-editor-- Reviewers: @szhorvat, @IvanIsCoding, @drj11 Archive: 10.5281/zenodo.10795225
Status
Status badge code:
Reviewers and authors:
Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)
Reviewer instructions & questions
@szhorvat & @IvanIsCoding, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review. First of all you need to run this command in a separate comment to create the checklist:
The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @danielskatz know.
β¨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest β¨
Checklists
π Checklist for @szhorvat
π Checklist for @drj11
π Checklist for @IvanIsCoding