Closed editorialbot closed 6 months ago
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I updated a citation to point to the published (recent) version opposed to a preprint!
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FYI, editorialbot commands need to be the first thing in a comment
@editorialbot generate pdf
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:wave: Great work on this @mikejohnson51 !
Here are some things that need to be addressed in the paper:
(J. ;. C. Johnson J. M.; Coll, 2022)
where "J. ;" is likely being referenced incorrectly. I believe this is from the author formatting in the actual reference where a semicolon was used instead of a comma.Once these are knocked out, we can move to the next step towards getting this published. Thanks!
Just following up on the status of the above @mikejohnson51. Thanks!
Just a reminder on the status of the above @mikejohnson51. Thanks!
Hi @crvernon thanks for all the feedback (and patience!), we have incorporated this, and the internal review we were required to go through. I think is in in good shape now!
This now reads:
These equations collectively define the "at a station hydraulic geometry" (AHG), with coefficients (a, c, k) and exponents (b, f, m) for the Q-TW, Q-Y, and Q-V relationships
. Further we modified the text to saymean velocity (V)
Fixed throughout. Thank you!
Fixed and changed to NOAA.
Changed throughout text.
changed to read
... accuracy within 0.4% NRMSE of the source data
Thank you this has been fixed!
Now reads
This reduction to a consistent AHG formulation not only enhances interoperability with efforts such as those by Enzminger (2023) or Afshari (2019), but....
Now reads
The development of this package began following the 2017 NOAA/NWS Office of Water Prediction Summer Institute (Johnson et al. 2017) where discussions highlighted the potential influence of channel shap representation on the performance of the National Water Model.
Resolved. Thank you!
This has been added!
This has been added!
[X] LINE 131: DOI points to the wrong paper
[X] LINE 151: Missing DOI: maybe https://doi.org/10.5194/nhess-19-2405-2019
Fixed.
Fixed.
@editorialbot generate pdf
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@editorialbot check references
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.3133/pp252 is OK
- 10.1002/aaai.12035 is OK
- 10.1016/j.jhydrol.2018.07.020 is OK
- 10.5281/zenodo.7868764 is OK
- 10.5281/zenodo.2558565 is OK
- 10.1111/1752-1688.12661 is OK
- 10.1111/1752-1688.12474 is OK
- 10.5194/nhess-19-2405-2019 is OK
- 10.1111/1752-1688.12540 is OK
- 10.20944/preprints202212.0390.v1 is OK
- 10.5194/hess-26-6121-2022 is OK
- 10.1016/j.envsoft.2020.104927 is OK
- 10.1016/j.envsoft.2023.105726 is OK
- 10.1029/2023JD038534 is OK
- 10.1016/j.jhydrol.2017.01.038 is OK
- 10.1111/jawr.12282 is OK
- 10.1111/1752-1688.12460 is OK
- 10.1002/env.2711 is OK
- 10.4211/technical.20171009 is OK
- 10.1111/1752-1688.13184 is OK
- 10.1002/2015WR017498 is OK
MISSING DOIs
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: National Hydrologic Geospatial Fabric Reference an...
- No DOI given, and none found for title: mco: Multiple Criteria Optimization Algorithms and...
- No DOI given, and none found for title: Inundation Mapping
- No DOI given, and none found for title: The WRF-Hydro® modeling system technical descripti...
- No DOI given, and none found for title: Height Above Nearest Drainage (HAND) and Hydraulic...
INVALID DOIs
- None
Thanks @mikejohnson51 this is looking good! I just see a few more things that need to be corrected before we move on to the next steps...
Thanks so much and great work!
Thank you for the very careful review @crvernon! I have made the following changes to the paper and bib files.
Removed in Line 44
Fixed. Thank you!
Added this comma and tweaked the third element to be more grammatically correct.
Added the complete script URL opposed to the relative repo path. Thank you!. I will test this when the new version is rendered.
I added a call out to the figure in the sentence that now reads:
The script to generate the plot found in Figure 1 can be found here...
[X] LINES 127-128: "united states" is lower case in the reference, to maintain capitalization in the bib file, you can wrap the content you want to target in brackets. For example, "....{United States}..."
[X] LINE 135: "united states" should be first letter capitalized
I wrapped all titles in
{...}
to ensure capitalization is retained throughout. Thank you for this tip!
@editorialbot generate pdf
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@editorialbot check references
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.3133/pp252 is OK
- 10.1002/aaai.12035 is OK
- 10.1016/j.jhydrol.2018.07.020 is OK
- 10.5281/zenodo.7868764 is OK
- 10.5281/zenodo.2558565 is OK
- 10.1111/1752-1688.12661 is OK
- 10.1111/1752-1688.12474 is OK
- 10.5194/nhess-19-2405-2019 is OK
- 10.1111/1752-1688.12540 is OK
- 10.20944/preprints202212.0390.v1 is OK
- 10.5194/hess-26-6121-2022 is OK
- 10.1016/j.envsoft.2020.104927 is OK
- 10.1016/j.envsoft.2023.105726 is OK
- 10.1029/2023JD038534 is OK
- 10.1016/j.jhydrol.2017.01.038 is OK
- 10.1111/jawr.12282 is OK
- 10.1111/1752-1688.12460 is OK
- 10.1002/env.2711 is OK
- 10.4211/technical.20171009 is OK
- 10.1111/1752-1688.13184 is OK
- 10.1002/2015WR017498 is OK
MISSING DOIs
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: National Hydrologic Geospatial Fabric Reference an...
- No DOI given, and none found for title: mco: Multiple Criteria Optimization Algorithms and...
- No DOI given, and none found for title: Inundation Mapping
- No DOI given, and none found for title: The WRF-Hydro® modeling system technical descripti...
- No DOI given, and none found for title: Height Above Nearest Drainage (HAND) and Hydraulic...
- No DOI given, and none found for title: Improved National-Scale Above-Normal Flow Predicti...
INVALID DOIs
- 129787b468aa4d55ace7b124ed27dbde is INVALID
@editorialbot generate pdf
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
@editorialbot check references
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.3133/pp252 is OK
- 10.1002/aaai.12035 is OK
- 10.1016/j.jhydrol.2018.07.020 is OK
- 10.5281/zenodo.7868764 is OK
- 10.5281/zenodo.2558565 is OK
- 10.1111/1752-1688.12661 is OK
- 10.1111/1752-1688.12474 is OK
- 10.5194/nhess-19-2405-2019 is OK
- 10.1111/1752-1688.12540 is OK
- 10.20944/preprints202212.0390.v1 is OK
- 10.5194/hess-26-6121-2022 is OK
- 10.1016/j.envsoft.2020.104927 is OK
- 10.1016/j.envsoft.2023.105726 is OK
- 10.1029/2023JD038534 is OK
- 10.1016/j.jhydrol.2017.01.038 is OK
- 10.1111/jawr.12282 is OK
- 10.1111/1752-1688.12460 is OK
- 10.1002/env.2711 is OK
- 10.4211/technical.20171009 is OK
- 10.1111/1752-1688.13184 is OK
- 10.1002/2015WR017498 is OK
MISSING DOIs
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: National Hydrologic Geospatial Fabric Reference an...
- No DOI given, and none found for title: National Hydrologic Geospatial Fabric (Hydrofabric...
- No DOI given, and none found for title: mco: Multiple Criteria Optimization Algorithms and...
- No DOI given, and none found for title: Inundation Mapping
- No DOI given, and none found for title: The WRF-Hydro® modeling system technical descripti...
- No DOI given, and none found for title: Height Above Nearest Drainage (HAND) and Hydraulic...
- No DOI given, and none found for title: Improved National-Scale Above-Normal Flow Predicti...
INVALID DOIs
- None
@editorialbot generate pdf
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
@editorialbot check references
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.3133/pp252 is OK
- 10.1002/aaai.12035 is OK
- 10.1016/j.jhydrol.2018.07.020 is OK
- 10.5281/zenodo.7868764 is OK
- 10.5281/zenodo.2558565 is OK
- 10.1111/1752-1688.12661 is OK
- 10.1111/1752-1688.12474 is OK
- 10.5194/nhess-19-2405-2019 is OK
- 10.1111/1752-1688.12540 is OK
- 10.20944/preprints202212.0390.v1 is OK
- 10.5194/hess-26-6121-2022 is OK
- 10.1016/j.envsoft.2020.104927 is OK
- 10.1016/j.envsoft.2023.105726 is OK
- 10.1029/2023JD038534 is OK
- 10.1016/j.jhydrol.2017.01.038 is OK
- 10.1111/jawr.12282 is OK
- 10.1111/1752-1688.12460 is OK
- 10.1002/env.2711 is OK
- 10.4211/technical.20171009 is OK
- 10.1111/1752-1688.13184 is OK
- 10.1002/2015WR017498 is OK
- 10.1029/2023WR034557 is OK
MISSING DOIs
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: National Hydrologic Geospatial Fabric Reference an...
- No DOI given, and none found for title: National Hydrologic Geospatial Fabric (Hydrofabric...
- No DOI given, and none found for title: mco: Multiple Criteria Optimization Algorithms and...
- No DOI given, and none found for title: Inundation Mapping
- No DOI given, and none found for title: The WRF-Hydro® modeling system technical descripti...
- No DOI given, and none found for title: Height Above Nearest Drainage (HAND) and Hydraulic...
INVALID DOIs
- None
👋 @mikejohnson51 - Thanks for making the changes to the paper, it looks great! We are almost there! Next is just setting up the archive for your new release.
We want to make sure the archival has the correct metadata that JOSS requires. This includes a title that matches the paper title and a correct author list.
So here is what we have left to do:
[x] Conduct a GitHub release of the current reviewed version of the software and archive the reviewed software in Zenodo or a similar service (e.g., figshare, an institutional repository). Please ensure that the software archive in Zenodo uses the same license as the license you have posted on GitHub. If using Zendo, you can link your GitHub repository to it so when you conduct the release it will automatically mint an archive in Zenodo. Let me know if you have questions and I'll be happy to help.
[ ] Check the archival deposit (e.g., in Zenodo) to ensure it has the correct metadata. This includes the title (should match the paper title) and author list (make sure the list is correct and people who only made a small fix are not on it). You may also add the authors' ORCID.
[x] Please respond with the DOI of the archived version and the version number of the release here.
I can then move forward with accepting the submission.
Hi @crvernon thanks for the very clear directions. I have uploaded a release artifact on Zenodo, using a MIT license and modified metadata. The DOI is: 10.5281/zenodo.10969037.
Please let me know what else is needed!
@editorialbot set 0.2.0 as version
Done! version is now 0.2.0
@editorialbot set 10.5281/zenodo.10969037 as archive
Done! archive is now 10.5281/zenodo.10969037
@editorialbot set <DOI here> as archive
@editorialbot set <version here> as version
@editorialbot generate pdf
@editorialbot check references
and ask author(s) to update as needed@editorialbot recommend-accept
Thanks @mikejohnson51! You missed one of your co-author's names in the Zenodo archive. No need to do an additional release, but could you please edit the metadata in your Zenodo record to show the same authors and author order as you have in your paper? Thanks!
Thanks @crvernon. Sorry about that. I was confused by inclusion comment about code contributions. While Shahab was not able to contribute to the code directly, the work, ideas, and progression of the project could not have been done without him. I have added him to the Zenodo archive along with both authors ORCID.
👋 @mikejohnson51 - I am recommending that this submission be accepted for publication. An EiC will review shortly and if all goes well this will go live soon! Thanks to @mabesa and @mengqi-z for a timely and constructive review! Congrats!
@editorialbot recommend-accept
Attempting dry run of processing paper acceptance...
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.3133/pp252 is OK
- 10.1002/aaai.12035 is OK
- 10.1016/j.jhydrol.2018.07.020 is OK
- 10.5281/zenodo.7868764 is OK
- 10.5281/zenodo.2558565 is OK
- 10.1111/1752-1688.12661 is OK
- 10.1111/1752-1688.12474 is OK
- 10.5194/nhess-19-2405-2019 is OK
- 10.1111/1752-1688.12540 is OK
- 10.20944/preprints202212.0390.v1 is OK
- 10.5194/hess-26-6121-2022 is OK
- 10.1016/j.envsoft.2020.104927 is OK
- 10.1016/j.envsoft.2023.105726 is OK
- 10.1029/2023JD038534 is OK
- 10.1016/j.jhydrol.2017.01.038 is OK
- 10.1111/jawr.12282 is OK
- 10.1111/1752-1688.12460 is OK
- 10.1002/env.2711 is OK
- 10.4211/technical.20171009 is OK
- 10.1111/1752-1688.13184 is OK
- 10.1002/2015WR017498 is OK
- 10.1029/2023WR034557 is OK
MISSING DOIs
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: National Hydrologic Geospatial Fabric Reference an...
- No DOI given, and none found for title: National Hydrologic Geospatial Fabric (Hydrofabric...
- No DOI given, and none found for title: mco: Multiple Criteria Optimization Algorithms and...
- No DOI given, and none found for title: Inundation Mapping
- No DOI given, and none found for title: The WRF-Hydro® modeling system technical descripti...
- No DOI given, and none found for title: Height Above Nearest Drainage (HAND) and Hydraulic...
INVALID DOIs
- None
:wave: @openjournals/ese-eics, this paper is ready to be accepted and published.
Check final proof :point_right::page_facing_up: Download article
If the paper PDF and the deposit XML files look good in https://github.com/openjournals/joss-papers/pull/5242, then you can now move forward with accepting the submission by compiling again with the command @editorialbot accept
Hi @mikejohnson51, I'll be taking over. Here is my to do list:
Paper:
Hello @kthyng, thanks for the review!
These functions formalize many of the concepts derived in Dingman and Afshari (2018) that relate AHG coefficients and exponents to cross-section hydraulics and geometry
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For the first bullet point I meant to change it to a proper sentence when changing the ";" to "," and add an "and" too as in (I can't copy paste so it's hard to write out...)
... Bieger, Bieger, and Blackburn-Lynch.
Otherwise keep it as ";" but have them be parenthetical and don't incorporate them into the sentence. Does that make sense?
Good morning @kthyng! Yes this makes sense. The sentence now reads
For instance, the National Oceanic and Atmospheric Administration National Water Model (Cosgrove et al. 2024)
uses trapezoidal geometries (Gochis et al. 2020) that are in part derived from hydraulic geometry relationships
and drainage area assumptions found in Bieger et al. (2015), Bieger et al. (2016), and Blackburn-Lynch,
Agouridis, and Barton (2017).
@editorialbot generate pdf
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Submitting author: !--author-handle-->@mikejohnson51<!--end-author-handle-- (J. Micahel Johnson) Repository: https://github.com/mikejohnson51/AHGestimation/ Branch with paper.md (empty if default branch): Version: 0.2.0 Editor: !--editor-->@crvernon<!--end-editor-- Reviewers: @mabesa, @mengqi-z Archive: 10.5281/zenodo.10969037
Status
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Reviewers and authors:
Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)
Reviewer instructions & questions
@mabesa & @mengqi-z, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review. First of all you need to run this command in a separate comment to create the checklist:
The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @crvernon know.
✨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest ✨
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