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[PRE REVIEW]: simK: Synthetic Data on Kidney Transplantation #6216

Closed editorialbot closed 5 months ago

editorialbot commented 5 months ago

Submitting author: !--author-handle-->@balima78<!--end-author-handle-- (Bruno A Lima) Repository: https://github.com/txopen/simK Branch with paper.md (empty if default branch): Version: v0.2.1 Editor: Pending Reviewers: Pending Managing EiC: Kevin M. Moerman

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Markdown: [![status](https://joss.theoj.org/papers/81aea7b434cf618344fef7e46826a871/status.svg)](https://joss.theoj.org/papers/81aea7b434cf618344fef7e46826a871)

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editorialbot commented 5 months ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

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editorialbot commented 5 months ago
Software report:

github.com/AlDanial/cloc v 1.88  T=0.13 s (563.5 files/s, 140382.0 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
JavaScript                       4           2099           1928           7019
HTML                            37           1103            117           3609
TeX                              2             69              9            521
R                               12            148            434            519
YAML                             7             27             10            165
Markdown                         4             67              0            147
XML                              1              0              0            129
Rmd                              4             87            147             66
SVG                              1              0              1             11
CSS                              1              0              0              1
JSON                             1              0              0              1
-------------------------------------------------------------------------------
SUM:                            74           3600           2646          12188
-------------------------------------------------------------------------------

gitinspector failed to run statistical information for the repository
editorialbot commented 5 months ago

Wordcount for paper.md is 1368

editorialbot commented 5 months ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.21105/joss.04807 is OK
- 10.1016/j.trim.2022.101578 is OK
- 10.32932/pjnh.2020.07.070 is OK
- 10.1371/journal.pdig.0000082 is OK
- 10.1093/jamia/ocx079 is OK
- 10.1186/s12911-019-0793-0 is OK
- 10.1016/j.humimm.2013.06.025 is OK

MISSING DOIs

- None

INVALID DOIs

- None
editorialbot commented 5 months ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 5 months ago

Five most similar historical JOSS papers:

simstudy: Illuminating research methods through data generation Submitting author: @assignUser Handling editor: @mikldk (Retired) Reviewers: @gagolews, @brunaw Similarity score: 0.8566

graphsim: An R package for simulating gene expression data from graph structures of biological pathways Submitting author: @TomKellyGenetics Handling editor: @majensen (Active) Reviewers: @rcannood, @corybrunson Similarity score: 0.8157

kep_solver: A Python package for kidney exchange programme exploration Submitting author: @WPettersson Handling editor: @jmschrei (Active) Reviewers: @arianesasso, @igarizio Similarity score: 0.8084

MCSD: A MATLAB Tool for Monte-Carlo Simulations of Diffusion in biological Tissues Submitting author: @davidnsousa Handling editor: @Kevin-Mattheus-Moerman (Active) Reviewers: @nnadeau, @mwacaan Similarity score: 0.8000

secuTrialR: Seamless interaction with clinical trial databases in R Submitting author: @PatrickRWright Handling editor: @csoneson (Active) Reviewers: @pacoramon, @sachsmc Similarity score: 0.7998

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

Kevin-Mattheus-Moerman commented 5 months ago

@balima78 thanks for this submission to JOSS. I am the AEiC on this track and here to process initial steps. I am currently trying to determine if this work is in scope for JOSS. Could you please clarify what aspects, in terms of lines of code, from the above software report constitutes your original work/contribution? For this type of R-projects typically the core achievement is the R-code itself (here 519 lines), and the JavaScript/HTML code is automatically generated e.g. to enable a GUI/web tool environment. Can you confirm this please?

balima78 commented 5 months ago

@Kevin-Mattheus-Moerman Yes, I confirm that my core achievement is the R-code itself.

Kevin-Mattheus-Moerman commented 5 months ago

@balima78 the editorial board have unfortunately concluded that this work is not in scope for JOSS. In particular the small size cause it to not conform to our substantial scholarly effort criteria.

We will now proceed to reject this submission.

Note the above conclusion does not mean the work is not useful or not of a high quality, it merely means that given its rather small size it is not in scope for JOSS.

We do hope you will consider JOSS for any future (re)submissions of a more substantial magnitude.

Kevin-Mattheus-Moerman commented 5 months ago

@editorialbot reject

editorialbot commented 5 months ago

Paper rejected.