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[PRE REVIEW]: taurex-emcee: automated, parallelized atmospheric retrievals with TauREx 3.1 and the emcee sampler #6280

Closed editorialbot closed 7 months ago

editorialbot commented 7 months ago

Submitting author: !--author-handle-->@abocchieri<!--end-author-handle-- (Andrea Bocchieri) Repository: https://github.com/ExObsSim/taurex-emcee Branch with paper.md (empty if default branch): joss Version: v0.4.0-beta Editor: Pending Reviewers: Pending Managing EiC: Dan Foreman-Mackey

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Markdown: [![status](https://joss.theoj.org/papers/54464cd302ddd06fc2305634889f1a14/status.svg)](https://joss.theoj.org/papers/54464cd302ddd06fc2305634889f1a14)

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Thanks for submitting your paper to JOSS @abocchieri. Currently, there isn't a JOSS editor assigned to your paper.

@abocchieri if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

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editorialbot commented 7 months ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf
editorialbot commented 7 months ago

Checking the BibTeX entries failed with the following error: 

Failed to parse BibTeX on value "," (COMMA) [#<BibTeX::Bibliography data=[23]>, "@", #<BibTeX::Entry >, {:author=>["John Geweke"], :title=>["{Evaluating the accuracy of sampling-based approaches to the calculation of posterior moments}"], :year=>"1991"}, ",", "month", "="]
editorialbot commented 7 months ago 
Software report:

github.com/AlDanial/cloc v 1.88  T=0.03 s (297.3 files/s, 72570.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                           4            143            191            581
TeX                              1             31              0            474
Jupyter Notebook                 1              0            645            181
Markdown                         2             43              0            125
YAML                             1              1              4             18
Bourne Shell                     1              0              1              3
-------------------------------------------------------------------------------
SUM:                            10            218            841           1382
-------------------------------------------------------------------------------

gitinspector failed to run statistical information for the repository
editorialbot commented 7 months ago

Wordcount for paper.md is 2242

editorialbot commented 7 months ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

dfm commented 7 months ago

@editorialbot query scope

@abocchieri — Thanks for your submission! Given the small size of this code base, I have submitted this pre-review for editorial review. This usually takes a week or two and I'll report back here as soon as I hear back from the rest of the editorial board. Thanks for your patience!

editorialbot commented 7 months ago

Submission flagged for editorial review.

editorialbot commented 7 months ago

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⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

abocchieri commented 7 months ago

@dfm Thank you for this opportunity. I am looking forward to the review.

abocchieri commented 7 months ago

Meanwhile, I have filled previously placeholder links to PyPi and readthedocs.

abocchieri commented 7 months ago

@editorialbot generate pdf

editorialbot commented 7 months ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 7 months ago

Five most similar historical JOSS papers:

ExoTETHyS: Tools for Exoplanetary Transits around host stars Submitting author: @gmorello Handling editor: @arfon (Active) Reviewers: @steven-murray, @williamjameshandley Similarity score: 0.8106

Astronomical échelle spectroscopy data analysis with muler Submitting author: @gully Handling editor: @xuanxu (Active) Reviewers: @bmorris3, @wtgee Similarity score: 0.8085

Bayesian X-ray Analysis (BXA) v4.0 Submitting author: @JohannesBuchner Handling editor: @jgostick (Active) Reviewers: @cescalara, @cescalara, @grburgess Similarity score: 0.8066

CASTRO: A Massively Parallel Compressible Astrophysics Simulation Code Submitting author: @zingale Handling editor: @eloisabentivegna (Active) Reviewers: @kegiljarhus, @bonh, @joshia5 Similarity score: 0.8049

exoplanet: Gradient-based probabilistic inference for exoplanet data & other astronomical time series Submitting author: @dfm Handling editor: @arfon (Active) Reviewers: @grburgess, @benjaminpope Similarity score: 0.8043

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

dfm commented 7 months ago

@editorialbot reject

@abocchieri — Thanks for your patience. The JOSS editorial board has decided that, given the small size and scope, this submission does not reach the bar for "substantial scholarly effort" as defined by the journal. This is not a judgement of the scientific merit of the software, just an application of JOSS's policy.

One possible alternative to JOSS is to follow GitHub's guide on how to create a permanent archive and DOI for your software. This DOI can then be used by others to cite your work.

editorialbot commented 7 months ago

Paper rejected.