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Reviews for the Journal of Open Source Software
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[PRE REVIEW]: MAMA: a Web application to MAnage Metabolomics laboratory Analysis requests #6291

Closed editorialbot closed 6 months ago

editorialbot commented 6 months ago

Submitting author: !--author-handle-->@npaulhe<!--end-author-handle-- (Nils Paulhe) Repository: https://github.com/eMetaboHUB-MAMA/mama-paper Branch with paper.md (empty if default branch): main Version: v1.4.0 Editor: Pending Reviewers: Pending Managing EiC: Arfon Smith

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status

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Author instructions

Thanks for submitting your paper to JOSS @npaulhe. Currently, there isn't a JOSS editor assigned to your paper.

@npaulhe if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

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editorialbot commented 6 months ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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editorialbot commented 6 months ago
Software report:

github.com/AlDanial/cloc v 1.88  T=0.01 s (560.3 files/s, 53115.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Markdown                         2             93              0            267
YAML                             1             10             13             52
TeX                              1              0              0             27
Bourne Shell                     1              3              2              7
-------------------------------------------------------------------------------
SUM:                             5            106             15            353
-------------------------------------------------------------------------------

gitinspector failed to run statistical information for the repository
editorialbot commented 6 months ago

Wordcount for paper.md is 2653

editorialbot commented 6 months ago

Failed to discover a valid open source license

editorialbot commented 6 months ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1038/sdata.2016.18 is OK

MISSING DOIs

- None

INVALID DOIs

- None
editorialbot commented 6 months ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

arfon commented 6 months ago

Notes from submitting author...

The code is spitted in 3 github repositories: - MAMA-WebApp - https://github.com/eMetaboHUB-MAMA/mama-webapp - a light webapp used to query the MAMA-REST API (jQuery / twitter boostrap) - MAMA-REST - https://github.com/eMetaboHUB-MAMA/mama-rest - a RESTFul API (PHP8 / slim / doctrine) - MAMA-REST Doc - https://github.com/eMetaboHUB-MAMA/mama-rest-doc - the REST API documentation (latex)

editorialbot commented 6 months ago

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arfon commented 6 months ago

@editorialbot query scope

Thanks for your submission @npaulhe. As this submission is a bit unusual for us, I'm going to ask the wider editorial team for a scope review.

editorialbot commented 6 months ago

Submission flagged for editorial review.

arfon commented 6 months ago

@editorialbot reject

Thanks for your submission to JOSS @npaulhe. While this looks like useful software for managing the operation of a laboratory, the consensus of our editorial team is that this software does not fit within our definition of research software.

One possible alternative to JOSS is to follow GitHub's guide on how to create a permanent archive and DOI for your software. This DOI can then be used by others to cite your work.

editorialbot commented 6 months ago

Paper rejected.