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[PRE REVIEW]: DataRepExp: a R shiny Application that makes Data FAIR for Data Repositories #6454

Closed editorialbot closed 3 months ago

editorialbot commented 5 months ago

Submitting author: !--author-handle-->@RoryChenXY<!--end-author-handle-- (Xinyue (Rory) Chen) Repository: https://github.com/RoryChenXY/DataRepExp_public Branch with paper.md (empty if default branch): Version: v1.0.0 Editor: !--editor-->@crvernon<!--end-editor-- Reviewers: @elimillera, @pydemull, @ZekeMarshall Managing EiC: Arfon Smith

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Markdown: [![status](https://joss.theoj.org/papers/08ca6a54216bb27b7ec37ead6bf951cb/status.svg)](https://joss.theoj.org/papers/08ca6a54216bb27b7ec37ead6bf951cb)

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Thanks for submitting your paper to JOSS @RoryChenXY. Currently, there isn't a JOSS editor assigned to your paper.

@RoryChenXY if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

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editorialbot commented 5 months ago

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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editorialbot commented 5 months ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.03 s (1580.9 files/s, 281428.7 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
R                               28            792            584           5098
CSV                              7              0              0            550
TeX                              1             40              0            291
Markdown                         5            103              0            248
CSS                              2             14              0             90
YAML                             1              1              4             18
-------------------------------------------------------------------------------
SUM:                            44            950            588           6295
-------------------------------------------------------------------------------

Commit count by author:

    25  Rory
    13  RoryXChen
editorialbot commented 5 months ago

Paper file info:

📄 Wordcount for paper.md is 1190

✅ The paper includes a Statement of need section

editorialbot commented 5 months ago

License info:

✅ License found: MIT License (Valid open source OSI approved license)

editorialbot commented 5 months ago 
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1371/journal.pcbi.1006038 is OK
- 10.21105/joss.01686 is OK

MISSING DOIs

- No DOI given, and none found for title: Dementias Platform Australia
- No DOI given, and none found for title: The FAIR Guiding Principles for scientific data ma...
- No DOI given, and none found for title: Ten simple rules for improving research data disco...
- 10.1007/s10654-023-00997-3 may be a valid DOI for title: Evaluating the harmonisation potential of diverse ...
- No DOI given, and none found for title: ready data: the C-Surv data model
- No DOI given, and none found for title: The Dementias Platform UK (DPUK) data portal
- No DOI given, and none found for title: Alzheimer’s Disease Data Initiative
- No DOI given, and none found for title: Dementias Platform Australia Data Portal
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: dplyr: A Grammar of Data Manipulation
- No DOI given, and none found for title: DT: A Wrapper of the JavaScript Library DataTables
- No DOI given, and none found for title: fontawesome: Easily Work with Font Awesome Icons
- No DOI given, and none found for title: forcats: Tools for Working with Categorical Variab...
- No DOI given, and none found for title: ggplot2: Create Elegant Data Visualisations Using ...
- No DOI given, and none found for title: htmltools: Tools for HTML
- No DOI given, and none found for title: lubridate: Make Dealing with Dates a Little Easier
- No DOI given, and none found for title: magrittr: A Forward-Pipe Operator for R
- No DOI given, and none found for title: plotly: Create Interactive Web Graphics via plotly...
- No DOI given, and none found for title: purrr: Functional Programming Tools
- No DOI given, and none found for title: readr: Read Rectangular Text Data
- No DOI given, and none found for title: scales: Scale Functions for Visualization
- No DOI given, and none found for title: shiny: Web Application Framework for R
- No DOI given, and none found for title: shinydashboard: Create Dashboards with Shiny
- No DOI given, and none found for title: shinyjs: Easily Improve the User Experience of You...
- No DOI given, and none found for title: shinyWidgets: Custom Inputs Widgets for Shiny
- No DOI given, and none found for title: stringr: Simple, Consistent Wrappers for Common St...
- No DOI given, and none found for title: tibble: Simple Data Frames
- No DOI given, and none found for title: tidyr: Tidy Messy Data
- No DOI given, and none found for title: tidyverse: Easily Install and Load the Tidyverse
- No DOI given, and none found for title: useful: A Collection of Handy, Useful Functions
- No DOI given, and none found for title: ggplot2: Elegant Graphics for Data Analysis
- No DOI given, and none found for title: Dates and Times Made Easy with lubridate
- 10.1201/9780429447273 may be a valid DOI for title: Interactive Web-Based Data Visualization with R, p...

INVALID DOIs

- None
editorialbot commented 5 months ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

arfon commented 5 months ago

@editorialbot invite @karegapauline as editor

:wave: @karegapauline – I recognize this is a little 'left field' for you, but wondered if this might be a good first paper to take on? / cc @csoneson

editorialbot commented 5 months ago

Invitation to edit this submission sent!

RoryChenXY commented 5 months ago

@arfon, maybe adithirgis and elimillera could be the reviewers? Thanks!

arfon commented 5 months ago

@editorialbot assign @karegapauline as editor

Adding @karegapauline as editor after confirming over Slack.

editorialbot commented 5 months ago

Assigned! @karegapauline is now the editor

arfon commented 5 months ago

/ cc @csoneson for visibility

crvernon commented 4 months ago

@editorialbot remove @karegapauline

editorialbot commented 4 months ago

I'm sorry human, I don't understand that. You can see what commands I support by typing:

@editorialbot commands

crvernon commented 4 months ago

@editorialbot remove editor

editorialbot commented 4 months ago

Editor removed!

crvernon commented 4 months ago

@editorialbot assign me as editor

editorialbot commented 4 months ago

Assigned! @crvernon is now the editor

crvernon commented 4 months ago

👋 @adithirgis - Would you be willing to review this submission to JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

crvernon commented 4 months ago

👋 @elimillera - Would you be willing to review this submission to JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

crvernon commented 4 months ago

@editorialbot check references

👋 @RoryChenXY - while we are waiting for reviewers to sign on, could you please check/fix the missing DOI's listed below from the citations in your paper? Thanks!

editorialbot commented 4 months ago 
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1371/journal.pcbi.1006038 is OK
- 10.21105/joss.01686 is OK

MISSING DOIs

- No DOI given, and none found for title: Dementias Platform Australia
- No DOI given, and none found for title: The FAIR Guiding Principles for scientific data ma...
- No DOI given, and none found for title: Ten simple rules for improving research data disco...
- 10.1007/s10654-023-00997-3 may be a valid DOI for title: Evaluating the harmonisation potential of diverse ...
- No DOI given, and none found for title: ready data: the C-Surv data model
- No DOI given, and none found for title: The Dementias Platform UK (DPUK) data portal
- No DOI given, and none found for title: Alzheimer’s Disease Data Initiative
- No DOI given, and none found for title: Dementias Platform Australia Data Portal
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: dplyr: A Grammar of Data Manipulation
- No DOI given, and none found for title: DT: A Wrapper of the JavaScript Library DataTables
- No DOI given, and none found for title: fontawesome: Easily Work with Font Awesome Icons
- No DOI given, and none found for title: forcats: Tools for Working with Categorical Variab...
- No DOI given, and none found for title: ggplot2: Create Elegant Data Visualisations Using ...
- No DOI given, and none found for title: htmltools: Tools for HTML
- No DOI given, and none found for title: lubridate: Make Dealing with Dates a Little Easier
- No DOI given, and none found for title: magrittr: A Forward-Pipe Operator for R
- No DOI given, and none found for title: plotly: Create Interactive Web Graphics via plotly...
- No DOI given, and none found for title: purrr: Functional Programming Tools
- No DOI given, and none found for title: readr: Read Rectangular Text Data
- No DOI given, and none found for title: scales: Scale Functions for Visualization
- No DOI given, and none found for title: shiny: Web Application Framework for R
- No DOI given, and none found for title: shinydashboard: Create Dashboards with Shiny
- No DOI given, and none found for title: shinyjs: Easily Improve the User Experience of You...
- No DOI given, and none found for title: shinyWidgets: Custom Inputs Widgets for Shiny
- No DOI given, and none found for title: stringr: Simple, Consistent Wrappers for Common St...
- No DOI given, and none found for title: tibble: Simple Data Frames
- No DOI given, and none found for title: tidyr: Tidy Messy Data
- No DOI given, and none found for title: tidyverse: Easily Install and Load the Tidyverse
- No DOI given, and none found for title: useful: A Collection of Handy, Useful Functions
- No DOI given, and none found for title: ggplot2: Elegant Graphics for Data Analysis
- No DOI given, and none found for title: Dates and Times Made Easy with lubridate
- 10.1201/9780429447273 may be a valid DOI for title: Interactive Web-Based Data Visualization with R, p...

INVALID DOIs

- None
RoryChenXY commented 4 months ago

@editorialbot check references

👋 @RoryChenXY - while we are waiting for reviewers to sign on, could you please check/fix the missing DOI's listed below from the citations in your paper? Thanks!

Dear Chris @crvernon , I have updated the .bib file in my repository the best I can, however, the websites and many R packages do not have DOI. Apologies for the inconvenience.

crvernon commented 3 months ago

👋 @ZekeMarshall - Would you be willing to review this submission to JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

crvernon commented 3 months ago

👋 @pydemull - Would you be willing to review this submission to JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

pydemull commented 3 months ago

Hi @crvernon, I could be interested in reviewing the paper. What would be a decent delay for you ? (I will be unable to provide something before May 15).

elimillera commented 3 months ago

👋 @elimillera - Would you be willing to review this submission to JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

@crvernon I would be able to review in the next 2-3 weeks.

ZekeMarshall commented 3 months ago

👋 @ZekeMarshall - Would you be willing to review this submission to JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

Hi @crvernon , yes I'm happy to help! I can work through this next week and hopefully have my checklist completed by next Friday.

crvernon commented 3 months ago

@editorialbot add @elimillera as reviewer

editorialbot commented 3 months ago

@elimillera added to the reviewers list!

crvernon commented 3 months ago

@editorialbot add @pydemull as reviewer

No problem on that timeline @pydemull, thanks!

editorialbot commented 3 months ago

@pydemull added to the reviewers list!

crvernon commented 3 months ago

@editorialbot add @ZekeMarshall as reviewer

Thanks @ZekeMarshall!

editorialbot commented 3 months ago

@ZekeMarshall added to the reviewers list!

crvernon commented 3 months ago

Thanks @elimillera!

crvernon commented 3 months ago

👋 - Alright @RoryChenXY, @elimillera, @pydemull, and @ZekeMarshall - I am going to close this Pre-Review and kick off the full review which you should receive a notification for. Thanks!

crvernon commented 3 months ago

@editorialbot start review

editorialbot commented 3 months ago

OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/6693.