[PRE REVIEW]: findSVI: an R package to calculate the Social Vulnerability Index at multiple geographical levels

[editorialbot]

Submitting author: !--author-handle-->@heli-xu<!--end-author-handle-- (Heli Xu) Repository: https://github.com/heli-xu/findSVI Branch with paper.md (empty if default branch): joss-paper Version: v0.1.2 Editor: !--editor-->@osorensen<!--end-editor-- Reviewers: @epiben, @mashrur-ayon Managing EiC: Olivia Guest

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.02 s (1670.6 files/s, 203907.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
R                               16            533            520           1462
Rmd                              6            192            291            432
CSV                              4              0              0            272
TeX                              1             37              0            253
Markdown                         5             52              0            226
YAML                             4             19              9             96
-------------------------------------------------------------------------------
SUM:                            36            833            820           2741
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Commit count by author:

   154  Heli Xu
     2  heli-xu

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 823

✅ The paper includes a Statement of need section

[editorialbot]

License info:

🟡 License found: Other (Check here for OSI approval)

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- None

MISSING DOIs

- No DOI given, and none found for title: A social vulnerability index for disaster manageme...
- No DOI given, and none found for title: CDC/ATSDR SVI data and documentation download
- No DOI given, and none found for title: tidycensus: Load US Census boundary and attribute ...
- No DOI given, and none found for title: Measuring community vulnerability to natural and a...
- 10.1038/s41591-021-01379-6 may be a valid DOI for title: Equitable allocation of COVID-19 vaccines in the U...
- 10.1016/j.jamcollsurg.2020.11.024 may be a valid DOI for title: High social vulnerability and “textbook outcomes” ...
- 10.1016/j.surg.2021.06.001 may be a valid DOI for title: Profiles in social vulnerability: the association ...
- No DOI given, and none found for title: Spatiotemporal distribution of power outages with ...
- 10.1016/j.ijdrr.2020.101517 may be a valid DOI for title: Spatial exploration of the CDC’s Social Vulnerabil...
- 10.1016/j.jacadv.2023.100577 may be a valid DOI for title: Impact of social vulnerability and demographics on...
- 10.1016/j.cpcardiol.2022.101182 may be a valid DOI for title: Neighborhood-level social vulnerability and preval...
- 10.1161/circulationaha.121.054516 may be a valid DOI for title: Social vulnerability and premature cardiovascular ...
- 10.1016/j.hjdsi.2021.100611 may be a valid DOI for title: Association of community-level social vulnerabilit...
- 10.15585/mmwr.mm7012e1 may be a valid DOI for title: County-level COVID-19 vaccination coverage and soc...
- 10.1016/j.amepre.2020.06.006 may be a valid DOI for title: The impact of social vulnerability on COVID-19 in ...
- 10.1007/s11606-020-05882-3 may be a valid DOI for title: County-level association of social vulnerability w...
- No DOI given, and none found for title: Social vulnerability and equity: The disproportion...
- No DOI given, and none found for title: Spatial inequities in COVID-19 testing, positivity...
- 10.1136/bmjopen-2020-048086 may be a valid DOI for title: Temporal trends in the association of social vulne...
- 10.1016/j.lana.2022.100220 may be a valid DOI for title: Racial/ethnic and neighbourhood social vulnerabili...
- 10.1093/aje/kwac076 may be a valid DOI for title: Heterogeneity in spatial inequities in COVID-19 va...
- 10.1016/j.socscimed.2022.115307 may be a valid DOI for title: Inequities in spatial accessibility to COVID-19 te...
- No DOI given, and none found for title: dplyr: A Grammar of Data Manipulation
- No DOI given, and none found for title: purrr: Functional Programming Tools
- No DOI given, and none found for title: stringr: Simple, Consistent Wrappers for Common St...
- No DOI given, and none found for title: tidyr: Tidy Messy Data
- No DOI given, and none found for title: tidyselect: Select from a Set of Strings
- No DOI given, and none found for title: rlang: Functions for Base Types and Core R and ’Ti...
- No DOI given, and none found for title: cli: Helpers for Developing Command Line Interface...

INVALID DOIs

- None

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[osorensen]

@editorialbot add @osorensen as editor

[editorialbot]

Assigned! @osorensen is now the editor

[osorensen]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- None

MISSING DOIs

- No DOI given, and none found for title: A social vulnerability index for disaster manageme...
- No DOI given, and none found for title: CDC/ATSDR SVI data and documentation download
- No DOI given, and none found for title: tidycensus: Load US Census boundary and attribute ...
- No DOI given, and none found for title: Measuring community vulnerability to natural and a...
- 10.1038/s41591-021-01379-6 may be a valid DOI for title: Equitable allocation of COVID-19 vaccines in the U...
- 10.1016/j.jamcollsurg.2020.11.024 may be a valid DOI for title: High social vulnerability and “textbook outcomes” ...
- 10.1016/j.surg.2021.06.001 may be a valid DOI for title: Profiles in social vulnerability: the association ...
- No DOI given, and none found for title: Spatiotemporal distribution of power outages with ...
- 10.1016/j.ijdrr.2020.101517 may be a valid DOI for title: Spatial exploration of the CDC’s Social Vulnerabil...
- 10.1016/j.jacadv.2023.100577 may be a valid DOI for title: Impact of social vulnerability and demographics on...
- 10.1016/j.cpcardiol.2022.101182 may be a valid DOI for title: Neighborhood-level social vulnerability and preval...
- 10.1161/circulationaha.121.054516 may be a valid DOI for title: Social vulnerability and premature cardiovascular ...
- 10.1016/j.hjdsi.2021.100611 may be a valid DOI for title: Association of community-level social vulnerabilit...
- 10.15585/mmwr.mm7012e1 may be a valid DOI for title: County-level COVID-19 vaccination coverage and soc...
- 10.1016/j.amepre.2020.06.006 may be a valid DOI for title: The impact of social vulnerability on COVID-19 in ...
- 10.1007/s11606-020-05882-3 may be a valid DOI for title: County-level association of social vulnerability w...
- No DOI given, and none found for title: Social vulnerability and equity: The disproportion...
- No DOI given, and none found for title: Spatial inequities in COVID-19 testing, positivity...
- 10.1136/bmjopen-2020-048086 may be a valid DOI for title: Temporal trends in the association of social vulne...
- 10.1016/j.lana.2022.100220 may be a valid DOI for title: Racial/ethnic and neighbourhood social vulnerabili...
- 10.1093/aje/kwac076 may be a valid DOI for title: Heterogeneity in spatial inequities in COVID-19 va...
- 10.1016/j.socscimed.2022.115307 may be a valid DOI for title: Inequities in spatial accessibility to COVID-19 te...
- No DOI given, and none found for title: dplyr: A Grammar of Data Manipulation
- No DOI given, and none found for title: purrr: Functional Programming Tools
- No DOI given, and none found for title: stringr: Simple, Consistent Wrappers for Common St...
- No DOI given, and none found for title: tidyr: Tidy Messy Data
- No DOI given, and none found for title: tidyselect: Select from a Set of Strings
- No DOI given, and none found for title: rlang: Functions for Base Types and Core R and ’Ti...
- No DOI given, and none found for title: cli: Helpers for Developing Command Line Interface...

INVALID DOIs

- None

@heli-xu can you please fix these missing DOIs in your reference source file and notify me here when done?

[osorensen]

:wave: @jamesmbaazam, @epiben, @s-bessey, @meenakshi-kushwaha, would any of you be willing to review this submission for JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

[heli-xu]

@heli-xu can you please fix these missing DOIs in your reference source file and notify me here when done?

Hi, I have updated the DOIs for most of the references, and for one article and several manuals without DOIs I included their URLs (https://github.com/heli-xu/findSVI/commit/83f2625021e8828f35dec358400f44324b100ee8). Please let me know if this works. Thank you for your help!

[epiben]

I'd be happy to. Will do my best to do it before Easter, which is holiday here.

[osorensen]

@editorialbot add @epiben as reviewer

[editorialbot]

@epiben added to the reviewers list!

[osorensen]

@editorialbot generate pdf

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[osorensen]

@editorialbot generate pdf

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[osorensen]

:wave: @mashrur-ayon, @chrisaberson, @franjoim, would any of you be willing to review this submission for JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

[mashrur-ayon]

Yes, I will be happy to review the package and the paper. Kindly add me as a reviewer.

Thank You.

[osorensen]

@editorialbot add @mashrur-ayon as reviewer

[editorialbot]

@mashrur-ayon added to the reviewers list!

[osorensen]

@editorialbot start review

[editorialbot]

OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/6525.