Closed editorialbot closed 2 months ago
Hello humans, I'm @editorialbot, a robot that can help you with some common editorial tasks.
For a list of things I can do to help you, just type:
@editorialbot commands
For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:
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Software report:
github.com/AlDanial/cloc v 1.90 T=0.30 s (900.1 files/s, 177379.0 lines/s)
-------------------------------------------------------------------------------
Language files blank comment code
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Python 246 7215 11172 28144
TeX 2 160 37 2283
SVG 3 3 3 1067
Markdown 4 227 0 885
reStructuredText 8 330 237 605
YAML 1 25 0 175
Dockerfile 1 3 9 15
Bourne Shell 1 4 0 12
TOML 1 0 0 3
-------------------------------------------------------------------------------
SUM: 267 7967 11458 33189
-------------------------------------------------------------------------------
Commit count by author:
1765 Martin Reinecke
1457 Philipp Arras
1129 Gordian Edenhofer
279 Theo Steininger
191 Reimar Leike
186 theos
131 Lukas Platz
113 Marco Selig
112 Vincent Eberle
112 pfrank
105 Philipp Frank
93 Massin Guerdi
79 Jait Dixit
79 dpumpe
57 Knollmueller, Jakob (kjako)
52 csongor
51 Ultima
47 Jakob Roth
39 veberle
38 Mihai Baltac
38 ultimanet
30 Philipp Haim
23 Jakob KnollmΓΌller
21 Philipp Frank (pfrank)
21 Rouven Lemmerz
16 Torsten Ensslin
16 matteani
12 Ensslin, Torsten (ensslint)
11 Julia Stadler
11 Matevz, Sraml (sraml)
10 Julian RΓΌstig
10 kjako
9 Christoph Lienhard
9 Hutschenreuter, Sebastian (hutsch)
8 Steininger, Theo (theos)
8 Ultimanet
5 wmarg
4 Andrija Kostic
4 Lukas Scheel-Platz
4 Simon Ding
3 Kostic, Andrija (akostic)
3 Matteo Guardiani
3 Matteo.Guardiani
3 Reimar
3 mattteani
3 natalia
2 Newrzella, Max-Niklas (maxn)
2 Pumpe, Daniel (dpumpe)
2 clienhar
1 David Gorbunov
1 David Outland
1 Harth-Kitzerow Johannes
1 Johannes Buchner
1 Platz, Lukas (lplatz)
1 Silvan Streit
1 ru87him
1 vkainz
Paper file info:
π Wordcount for paper.md
is 3244
β
The paper includes a Statement of need
section
License info:
π‘ License found: GNU General Public License v3.0
(Check here for OSI approval)
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.21105/joss.00695 is OK
- 10.1046/j.1365-8711.2002.05881.x is OK
- 10.3847/1538-4365/ac4df7 is OK
- 10.1051/0004-6361/202141570 is OK
- 10.1051/0004-6361/202141249 is OK
- 10.48550/arXiv.2208.00211 is OK
- 10.48550/arXiv.2206.06143 is OK
- 10.48550/arXiv.2206.06205 is OK
- 10.3847/1538-4365/aafbea is OK
- 10.1086/498708 is OK
- 10.1088/0004-6256/140/6/1868 is OK
- 10.3847/1538-4357/ac1f96 is OK
- 10.1051/0004-6361/201935093 is OK
- 10.1051/0004-6361/202038169 is OK
- 10.48550/ARXIV.2206.10634 is OK
- 10.48550/arXiv.2308.01295 is OK
- 10.1371/journal.pone.0275011 is OK
- 10.1038/s41586-020-2649-2 is OK
- 10.48550/ARXIV.1901.11033 is OK
- 10.3390/e23070853 is OK
- 10.3390/psf2022005006 is OK
- 10.1109/TPAMI.2015.2448083 is OK
- 10.3847/1538-3881/aa9332 is OK
- 10.5281/zenodo.10463641 is OK
- 10.18637/jss.v076.i01 is OK
- 10.7717/peerj-cs.55 is OK
- 10.1086/670067 is OK
- 10.1093/mnras/staa278 is OK
- 10.5281/zenodo.8408702 is OK
- 10.48550/arXiv.1912.11554 is OK
- 10.1002/andp.201800290 is OK
- 10.1051/0004-6361/202243319 is OK
- 10.1051/0004-6361/202142846 is OK
- 10.1051/0004-6361/201834695 is OK
- 10.1051/0004-6361/201832832 is OK
- 10.1051/0004-6361/201730831 is OK
- 10.1093/mnras/sty3341 is OK
- 10.1051/0004-6361/202038708 is OK
- 10.1051/0004-6361/201833284 is OK
- 10.3847/2041-8213/ac67db is OK
- 10.1051/0004-6361/201628885 is OK
- 10.1051/0004-6361/202244784 is OK
- 10.1051/0004-6361/202141298 is OK
- 10.48550/arXiv.2204.11715 is OK
- 10.3847/1538-4357/ab5362 is OK
- 10.1093/mnras/sty1008 is OK
- 10.48550/arXiv.2303.03420 is OK
- 10.1051/0004-6361/201935765 is OK
- 10.1051/0004-6361/202142369 is OK
- 10.48550/arXiv.2303.09926 is OK
- 10.1051/0004-6361/201323195 is OK
- 10.48550/arXiv.2206.06710 is OK
- 10.1038/s41586-019-1874-z is OK
- 10.3847/1538-4365/abe465 is OK
- 10.3847/1538-3881/ab99c8 is OK
- 10.48550/arXiv.2206.05796 is OK
- 10.1038/s41550-021-01548-0 is OK
- 10.3847/1538-4357/ab2388 is OK
- 10.1051/0004-6361/202346851 is OK
- 10.48550/arXiv.2304.12350 is OK
- 10.1051/0004-6361/202346423 is OK
- 10.3847/1538-3881/acabc1 is OK
- 10.1051/0004-6361/202140486 is OK
- 10.1051/0004-6361/202243326 is OK
- 10.21105/joss.00695 is OK
- 10.21105/joss.01298 is OK
- 10.1086/427976 is OK
- 10.3847/1538-4357/ac7c74 is OK
- 10.3847/1538-3881/aabc4f is OK
- 10.1051/0004-6361/201322068 is OK
- 10.1051/0004-6361/202243819 is OK
- 10.1103/PhysRevE.96.052104 is OK
- 10.1088/1475-7516/2021/04/071 is OK
- 10.48550/arXiv.2308.09176 is OK
- 10.3390/e25040652 is OK
- 10.3390/psf2022005033 is OK
- 10.1051/0004-6361/201935555 is OK
MISSING DOIs
- No DOI given, and none found for title: Physics of the Interstellar and Intergalactic Medi...
- No DOI given, and none found for title: The Pan-STARRS1 Surveys
- No DOI given, and none found for title: Variational Inference with Normalizing Flows
- No DOI given, and none found for title: The No-U-Turn Sampler: Adaptively Setting Path Len...
- No DOI given, and none found for title: JAX: composable transformations of Python+NumPy pr...
- No DOI given, and none found for title: DUCC: Distinctly Useful Code Collection
- No DOI given, and none found for title: Equinox: neural networks in JAX via callable PyTre...
- No DOI given, and none found for title: Efficient and Modular Implicit Differentiation
- No DOI given, and none found for title: The DeepMind JAX Ecosystem
- No DOI given, and none found for title: Scalable Variational Gaussian Process Classificati...
- No DOI given, and none found for title: GPflow: A Gaussian Process Library Using Tensorflo...
- No DOI given, and none found for title: Pyro: Deep Universal Probabilistic Programming
- No DOI given, and none found for title: Blackjax: A sampling library for JAX
- No DOI given, and none found for title: NIFTY: A versatile Python library for signal infer...
- No DOI given, and none found for title: NIFTy5: Numerical Information Field Theory v5
- No DOI given, and none found for title: Re-Envisioning Numerical Information Field Theory ...
- Entry without DOI or title found
INVALID DOIs
- None
@Abinashbunty, @apizzuto β This is the review thread for the paper. All of our correspondence will happen here from now on. Thanks again for agreeing to participate!
π Please read the "Reviewer instructions & questions" in the first comment above, and generate your checklists by commenting @editorialbot generate my checklist
on this issue ASAP. As you go over the submission, please check any items that you feel have been satisfied. There are also links to the JOSS reviewer guidelines.
The JOSS review is different from most other journals. Our goal is to work with the authors to help them meet our criteria instead of merely passing judgment on the submission. As such, the reviewers are encouraged to submit issues and pull requests on the software repository. When doing so, please mention openjournals/joss-reviews#6593
so that a link is created to this thread (and I can keep an eye on what is happening). Please also feel free to comment and ask questions on this thread. In my experience, it is better to post comments/questions/suggestions as you come across them instead of waiting until you've reviewed the entire package.
We aim for the review process to be completed within about 4-6 weeks but please try to make a start ahead of this as JOSS reviews are by their nature iterative and any early feedback you may be able to provide to the author will be very helpful in meeting this schedule. Please get your review started as soon as possible!
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
Hello authors β thank you for a lovely piece of software! I enjoyed installing and playing around with this tool. Overall, I found the paper to be extremely clear, the API docs and installation directions were well done, and the tutorials were a really nice introduction to solving real problems with the software.
I left a couple of tiny nits as issues in the repository, they are pretty much all documentation based, so hopefully they won't be hard to address. The only remaining technical parts of my review involve reproducing plots from the paper, which I will try to do in the next few days. I will only benchmark a few performance metrics just to make sure that things seem to line up with your performance plot. I will circle back once I've completed those parts (and I'll check off the remaining boxes in my review once the issues I opened up are addressed). Cheers!
Many thanks for the review! I am very happy to hear that you enjoyed playing around with NIFTy.re! :)
Thanks for filing these issues! They are all things that definitely still should be improved! I am currently in the midst of putting the finishing touches on my PhD thesis but I'll work on these issues as soon as possible, hopefully resolving them within the next week or so.
Regarding the performance validation, feel free to use the [benchmarking script in the repo])https://github.com/NIFTy-PPL/NIFTy/blob/paper/paper/minimal_benchmark.py) to validate the results. I used it together with this visualization script to create the figure in the paper.
Thanks for the constructive feedback! I incorporated all of your comments into the code :)
@Abinashbunty Do you now approximately when you'll be able to review NIFTy.re? :)
@Edenhofer Hi! Perhaps 2 more days. I'm executing some parts of the package and then the review will be over. ππ»
All of your fixes for the issues I opened were great, and I have completed the last items on my checklist. Everything looks good from my end.
@Abinashbunty β I'll check in here too. Let me know if you have any blockers to finishing your review.
(@Edenhofer β Please let me do the reviewer reminders in the future!)
@editorialbot commands
Hello @Abinashbunty, here are the things you can ask me to do:
# List all available commands
@editorialbot commands
# Get a list of all editors's GitHub handles
@editorialbot list editors
# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist
# Set a value for branch
@editorialbot set joss-paper as branch
# Run checks and provide information on the repository and the paper file
@editorialbot check repository
# Check the references of the paper for missing DOIs
@editorialbot check references
# Generates the pdf paper
@editorialbot generate pdf
# Generates a LaTeX preprint file
@editorialbot generate preprint
# Get a link to the complete list of reviewers
@editorialbot list reviewers
@editorialbot check references
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.21105/joss.00695 is OK
- 10.1046/j.1365-8711.2002.05881.x is OK
- 10.3847/1538-4365/ac4df7 is OK
- 10.1051/0004-6361/202141570 is OK
- 10.1051/0004-6361/202141249 is OK
- 10.48550/arXiv.2208.00211 is OK
- 10.48550/arXiv.2206.06143 is OK
- 10.48550/arXiv.2206.06205 is OK
- 10.3847/1538-4365/aafbea is OK
- 10.1086/498708 is OK
- 10.1088/0004-6256/140/6/1868 is OK
- 10.3847/1538-4357/ac1f96 is OK
- 10.1051/0004-6361/201935093 is OK
- 10.1051/0004-6361/202038169 is OK
- 10.48550/ARXIV.2206.10634 is OK
- 10.48550/arXiv.2308.01295 is OK
- 10.1371/journal.pone.0275011 is OK
- 10.1038/s41586-020-2649-2 is OK
- 10.48550/ARXIV.1901.11033 is OK
- 10.3390/e23070853 is OK
- 10.3390/psf2022005006 is OK
- 10.1109/TPAMI.2015.2448083 is OK
- 10.3847/1538-3881/aa9332 is OK
- 10.5281/zenodo.10463641 is OK
- 10.18637/jss.v076.i01 is OK
- 10.7717/peerj-cs.55 is OK
- 10.1086/670067 is OK
- 10.1093/mnras/staa278 is OK
- 10.5281/zenodo.8408702 is OK
- 10.48550/arXiv.1912.11554 is OK
- 10.1002/andp.201800290 is OK
- 10.1051/0004-6361/202243319 is OK
- 10.1051/0004-6361/202142846 is OK
- 10.1051/0004-6361/201834695 is OK
- 10.1051/0004-6361/201832832 is OK
- 10.1051/0004-6361/201730831 is OK
- 10.1093/mnras/sty3341 is OK
- 10.1051/0004-6361/202038708 is OK
- 10.1051/0004-6361/201833284 is OK
- 10.3847/2041-8213/ac67db is OK
- 10.1051/0004-6361/201628885 is OK
- 10.1051/0004-6361/202244784 is OK
- 10.1051/0004-6361/202141298 is OK
- 10.48550/arXiv.2204.11715 is OK
- 10.3847/1538-4357/ab5362 is OK
- 10.1093/mnras/sty1008 is OK
- 10.48550/arXiv.2303.03420 is OK
- 10.1051/0004-6361/201935765 is OK
- 10.1051/0004-6361/202142369 is OK
- 10.48550/arXiv.2303.09926 is OK
- 10.1051/0004-6361/201323195 is OK
- 10.48550/arXiv.2206.06710 is OK
- 10.1038/s41586-019-1874-z is OK
- 10.3847/1538-4365/abe465 is OK
- 10.3847/1538-3881/ab99c8 is OK
- 10.48550/arXiv.2206.05796 is OK
- 10.1038/s41550-021-01548-0 is OK
- 10.3847/1538-4357/ab2388 is OK
- 10.1051/0004-6361/202346851 is OK
- 10.48550/arXiv.2304.12350 is OK
- 10.1051/0004-6361/202346423 is OK
- 10.3847/1538-3881/acabc1 is OK
- 10.1051/0004-6361/202140486 is OK
- 10.1051/0004-6361/202243326 is OK
- 10.21105/joss.00695 is OK
- 10.21105/joss.01298 is OK
- 10.1086/427976 is OK
- 10.3847/1538-4357/ac7c74 is OK
- 10.3847/1538-3881/aabc4f is OK
- 10.1051/0004-6361/201322068 is OK
- 10.1051/0004-6361/202243819 is OK
- 10.1103/PhysRevE.96.052104 is OK
- 10.1088/1475-7516/2021/04/071 is OK
- 10.48550/arXiv.2308.09176 is OK
- 10.3390/e25040652 is OK
- 10.3390/psf2022005033 is OK
- 10.1051/0004-6361/201935555 is OK
MISSING DOIs
- No DOI given, and none found for title: Physics of the Interstellar and Intergalactic Medi...
- No DOI given, and none found for title: The Pan-STARRS1 Surveys
- No DOI given, and none found for title: Variational Inference with Normalizing Flows
- No DOI given, and none found for title: The No-U-Turn Sampler: Adaptively Setting Path Len...
- No DOI given, and none found for title: JAX: composable transformations of Python+NumPy pr...
- No DOI given, and none found for title: DUCC: Distinctly Useful Code Collection
- No DOI given, and none found for title: Equinox: neural networks in JAX via callable PyTre...
- No DOI given, and none found for title: Efficient and Modular Implicit Differentiation
- No DOI given, and none found for title: The DeepMind JAX Ecosystem
- No DOI given, and none found for title: Scalable Variational Gaussian Process Classificati...
- No DOI given, and none found for title: GPflow: A Gaussian Process Library Using Tensorflo...
- No DOI given, and none found for title: Pyro: Deep Universal Probabilistic Programming
- No DOI given, and none found for title: Blackjax: A sampling library for JAX
- No DOI given, and none found for title: NIFTY: A versatile Python library for signal infer...
- No DOI given, and none found for title: NIFTy5: Numerical Information Field Theory v5
- No DOI given, and none found for title: Re-Envisioning Numerical Information Field Theory ...
- Entry without DOI or title found
INVALID DOIs
- None
@dfm I have verified all the aspects necessary for completing the review. Excellent paper! Kudos to the authors. Well documented with proper flow of execution and examples. I enjoyed installing and working on it for a while. π
I just have to check off the last remaining part related to missing DOIs which the bot mentions. The issue for the same has been created. Once that is resolved, my review is complete. ππ»
@Abinashbunty, @apizzuto β Thanks for your thorough and constructive reviews!!
@Edenhofer β I've opened a small PR with some minor edits to the manuscript, please take a look and merge or let me know what you think. Please also incorporate the DOIs identified by @Abinashbunty when you have a chance.
Once you've done that:
Thanks @apizzuto and @Abinashbunty for reviewing the submission and for providing valuable and constructive feedback! Thanks also @dfm for guiding us through the review process and for your fixes! I'm currently on vacation without my Laptop for one more week but will incorporate the feedback and finalize the submission at the end of next week.
Thanks for your all of your feedback! I've updated the references accordingly. Note, I left out the DOI if the journal paper doesn't have one even if there is a arXiv paper with a DOI. I left out the DOI as the cited paper technically has no unique identifier and the arXiv paper might be slightly different and/or outdated. I'm happy to add them in if the consensus is to include DOIs for arXiv papers in this case.
I tagged the most recent release with v8.5.1 and pushed a release to zenodo (DOI 10.5281/zenodo.11441976).
Hi @dfm I approve of the citing of the references to the respective research papers that do not have a DOI apart from the one in arXiv. And hence also approve of the changes implemented by the authors. I'm just going to run the bot command for checking references as a final report generation. ππ»
@editorialbot check references
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.1051/0004-6361/201935555 is OK
- 10.1038/s41550-021-01548-0 is OK
- 10.1051/0004-6361/201322068 is OK
- 10.3847/1538-3881/aabc4f is OK
- 10.3847/1538-4357/ac7c74 is OK
- 10.18637/jss.v076.i01 is OK
- 10.3390/e25040652 is OK
- 10.3390/psf2022005033 is OK
- 10.48550/ARXIV.2206.10634 is OK
- 10.1051/0004-6361/202347628 is OK
- 10.1086/670067 is OK
- 10.3847/1538-3881/aa9332 is OK
- 10.5281/zenodo.10463641 is OK
- 10.1103/PhysRevE.96.052104 is OK
- 10.3390/e23070853 is OK
- 10.3390/psf2022005006 is OK
- 10.1086/427976 is OK
- 10.21105/joss.00695 is OK
- 10.1371/journal.pone.0275011 is OK
- 10.1038/s41586-020-2649-2 is OK
- 10.1051/0004-6361/202140486 is OK
- 10.48550/arXiv.2304.12350 is OK
- 10.48550/ARXIV.1901.11033 is OK
- 10.5281/zenodo.8408702 is OK
- 10.1051/0004-6361/201935093 is OK
- 10.1051/0004-6361/202038169 is OK
- 10.48550/arXiv.2204.11715 is OK
- 10.1051/0004-6361/202243326 is OK
- 10.48550/arXiv.1912.11554 is OK
- 10.1051/0004-6361/202346851 is OK
- 10.3847/1538-3881/acabc1 is OK
- 10.7717/peerj-cs.55 is OK
- 10.1051/0004-6361/202243819 is OK
- 10.1051/0004-6361/201321236 is OK
- 10.1109/TPAMI.2015.2448083 is OK
- 10.1093/mnras/staa278 is OK
- 10.1002/andp.201800290 is OK
- 10.1051/0004-6361/202346423 is OK
- 10.1088/1475-7516/2021/04/071 is OK
- 10.48550/arXiv.2308.09176 is OK
- 10.21105/joss.01298 is OK
MISSING DOIs
- No DOI given, and none found for title: NIFTy5: Numerical Information Field Theory v5
- No DOI given, and none found for title: Pyro: Deep Universal Probabilistic Programming
- No DOI given, and none found for title: Blackjax: A sampling library for JAX
- No DOI given, and none found for title: Efficient and Modular Implicit Differentiation
- No DOI given, and none found for title: The DeepMind JAX Ecosystem
- No DOI given, and none found for title: DUCC: Distinctly Useful Code Collection
- No DOI given, and none found for title: Scalable Variational Gaussian Process Classificati...
- No DOI given, and none found for title: The No-U-Turn Sampler: Adaptively Setting Path Len...
- No DOI given, and none found for title: JAX: composable transformations of Python+NumPy pr...
- No DOI given, and none found for title: Equinox: neural networks in JAX via callable PyTre...
- No DOI given, and none found for title: GPflow: A Gaussian Process Library Using Tensorflo...
- No DOI given, and none found for title: Variational Inference with Normalizing Flows
INVALID DOIs
- None
@editorialbot set 10.5281/zenodo.11441976 as archive
Done! archive is now 10.5281/zenodo.11441976
@editorialbot set v8.5.1 as version
Done! version is now v8.5.1
@editorialbot generate pdf
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
@editorialbot recommend-accept
Attempting dry run of processing paper acceptance...
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.1051/0004-6361/201935555 is OK
- 10.1038/s41550-021-01548-0 is OK
- 10.1051/0004-6361/201322068 is OK
- 10.3847/1538-3881/aabc4f is OK
- 10.3847/1538-4357/ac7c74 is OK
- 10.18637/jss.v076.i01 is OK
- 10.3390/e25040652 is OK
- 10.3390/psf2022005033 is OK
- 10.48550/ARXIV.2206.10634 is OK
- 10.1051/0004-6361/202347628 is OK
- 10.1086/670067 is OK
- 10.3847/1538-3881/aa9332 is OK
- 10.5281/zenodo.10463641 is OK
- 10.1103/PhysRevE.96.052104 is OK
- 10.3390/e23070853 is OK
- 10.3390/psf2022005006 is OK
- 10.1086/427976 is OK
- 10.21105/joss.00695 is OK
- 10.1371/journal.pone.0275011 is OK
- 10.1038/s41586-020-2649-2 is OK
- 10.1051/0004-6361/202140486 is OK
- 10.48550/arXiv.2304.12350 is OK
- 10.48550/ARXIV.1901.11033 is OK
- 10.5281/zenodo.8408702 is OK
- 10.1051/0004-6361/201935093 is OK
- 10.1051/0004-6361/202038169 is OK
- 10.48550/arXiv.2204.11715 is OK
- 10.1051/0004-6361/202243326 is OK
- 10.48550/arXiv.1912.11554 is OK
- 10.1051/0004-6361/202346851 is OK
- 10.3847/1538-3881/acabc1 is OK
- 10.7717/peerj-cs.55 is OK
- 10.1051/0004-6361/202243819 is OK
- 10.1051/0004-6361/201321236 is OK
- 10.1109/TPAMI.2015.2448083 is OK
- 10.1093/mnras/staa278 is OK
- 10.1002/andp.201800290 is OK
- 10.1051/0004-6361/202346423 is OK
- 10.1088/1475-7516/2021/04/071 is OK
- 10.48550/arXiv.2308.09176 is OK
- 10.21105/joss.01298 is OK
MISSING DOIs
- No DOI given, and none found for title: NIFTy5: Numerical Information Field Theory v5
- No DOI given, and none found for title: Pyro: Deep Universal Probabilistic Programming
- No DOI given, and none found for title: Blackjax: A sampling library for JAX
- No DOI given, and none found for title: Efficient and Modular Implicit Differentiation
- No DOI given, and none found for title: The DeepMind JAX Ecosystem
- No DOI given, and none found for title: DUCC: Distinctly Useful Code Collection
- No DOI given, and none found for title: Scalable Variational Gaussian Process Classificati...
- No DOI given, and none found for title: The No-U-Turn Sampler: Adaptively Setting Path Len...
- No DOI given, and none found for title: JAX: composable transformations of Python+NumPy pr...
- No DOI given, and none found for title: Equinox: neural networks in JAX via callable PyTre...
- No DOI given, and none found for title: GPflow: A Gaussian Process Library Using Tensorflo...
- No DOI given, and none found for title: Variational Inference with Normalizing Flows
INVALID DOIs
- None
:wave: @openjournals/aass-eics, this paper is ready to be accepted and published.
Check final proof :point_right::page_facing_up: Download article
If the paper PDF and the deposit XML files look good in https://github.com/openjournals/joss-papers/pull/5505, then you can now move forward with accepting the submission by compiling again with the command @editorialbot accept
@editorialbot accept
Doing it live! Attempting automated processing of paper acceptance...
Ensure proper citation by uploading a plain text CITATION.cff file to the default branch of your repository.
If using GitHub, a Cite this repository menu will appear in the About section, containing both APA and BibTeX formats. When exported to Zotero using a browser plugin, Zotero will automatically create an entry using the information contained in the .cff file.
You can copy the contents for your CITATION.cff file here:
``` cff-version: "1.2.0" authors: - family-names: Edenhofer given-names: Gordian orcid: "https://orcid.org/0000-0003-3122-4894" - family-names: Frank given-names: Philipp orcid: "https://orcid.org/0000-0001-5610-3779" - family-names: Roth given-names: Jakob orcid: "https://orcid.org/0000-0002-8873-8215" - family-names: Leike given-names: Reimar H. orcid: "https://orcid.org/0000-0002-1640-6772" - family-names: Guerdi given-names: Massin - family-names: Scheel-Platz given-names: Lukas I. orcid: "https://orcid.org/0000-0003-0809-9634" - family-names: Guardiani given-names: Matteo orcid: "https://orcid.org/0000-0002-4905-6692" - family-names: Eberle given-names: Vincent orcid: "https://orcid.org/0000-0002-5713-3475" - family-names: Westerkamp given-names: Margret orcid: "https://orcid.org/0000-0001-7218-8282" - family-names: EnΓlin given-names: Torsten A. orcid: "https://orcid.org/0000-0001-5246-1624" contact: - family-names: Edenhofer given-names: Gordian orcid: "https://orcid.org/0000-0003-3122-4894" doi: 10.5281/zenodo.11441976 message: If you use this software, please cite our article in the Journal of Open Source Software. preferred-citation: authors: - family-names: Edenhofer given-names: Gordian orcid: "https://orcid.org/0000-0003-3122-4894" - family-names: Frank given-names: Philipp orcid: "https://orcid.org/0000-0001-5610-3779" - family-names: Roth given-names: Jakob orcid: "https://orcid.org/0000-0002-8873-8215" - family-names: Leike given-names: Reimar H. orcid: "https://orcid.org/0000-0002-1640-6772" - family-names: Guerdi given-names: Massin - family-names: Scheel-Platz given-names: Lukas I. orcid: "https://orcid.org/0000-0003-0809-9634" - family-names: Guardiani given-names: Matteo orcid: "https://orcid.org/0000-0002-4905-6692" - family-names: Eberle given-names: Vincent orcid: "https://orcid.org/0000-0002-5713-3475" - family-names: Westerkamp given-names: Margret orcid: "https://orcid.org/0000-0001-7218-8282" - family-names: EnΓlin given-names: Torsten A. orcid: "https://orcid.org/0000-0001-5246-1624" date-published: 2024-06-15 doi: 10.21105/joss.06593 issn: 2475-9066 issue: 98 journal: Journal of Open Source Software publisher: name: Open Journals start: 6593 title: "Re-Envisioning Numerical Information Field Theory (NIFTy.re): A Library for Gaussian Processes and Variational Inference" type: article url: "https://joss.theoj.org/papers/10.21105/joss.06593" volume: 9 title: "Re-Envisioning Numerical Information Field Theory (NIFTy.re): A Library for Gaussian Processes and Variational Inference" ```
If the repository is not hosted on GitHub, a .cff file can still be uploaded to set your preferred citation. Users will be able to manually copy and paste the citation.
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Markdown:
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HTML:
<a style="border-width:0" href="https://doi.org/10.21105/joss.06593">
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</a>
reStructuredText:
.. image:: https://joss.theoj.org/papers/10.21105/joss.06593/status.svg
:target: https://doi.org/10.21105/joss.06593
This is how it will look in your documentation:
We need your help!
The Journal of Open Source Software is a community-run journal and relies upon volunteer effort. If you'd like to support us please consider doing either one (or both) of the the following:
Submitting author: !--author-handle-->@Edenhofer<!--end-author-handle-- (Gordian Edenhofer) Repository: https://github.com/nifty-ppl/nifty Branch with paper.md (empty if default branch): paper Version: v8.5.1 Editor: !--editor-->@dfm<!--end-editor-- Reviewers: @Abinashbunty, @apizzuto Archive: 10.5281/zenodo.11441976
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Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)
Reviewer instructions & questions
@Abinashbunty & @apizzuto, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review. First of all you need to run this command in a separate comment to create the checklist:
The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @dfm know.
β¨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest β¨
Checklists
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