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[PRE REVIEW]: MIMER : R Package for MIMIC Data Wrangling for AMR Studies #6790

Closed editorialbot closed 4 months ago

editorialbot commented 4 months ago

Submitting author: !--author-handle-->@anoopvelluv<!--end-author-handle-- (Anoop Velluva) Repository: https://github.com/CAMO-NET-LIV/MIMER Branch with paper.md (empty if default branch): Version: 1.0.1 Editor: Pending Reviewers: Pending Managing EiC: Kevin M. Moerman

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editorialbot commented 4 months ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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editorialbot commented 4 months ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.04 s (682.2 files/s, 327344.0 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
CSV                              2              0              0          10039
Markdown                         9            280              0           1076
R                               12            204            342            602
TeX                              1              6              0            137
Rmd                              1             43             66             88
YAML                             2             11              6             56
-------------------------------------------------------------------------------
SUM:                            27            544            414          11998
-------------------------------------------------------------------------------

Commit count by author:

    99  anoopvelluv
    16  agerada
    11  Anoop Velluva
     2  Alessandro Gerada
     1  amh312
editorialbot commented 4 months ago

:warning: An error happened when generating the pdf. Problem with ORCID (0000-0000-0000-0000) for Alex Howard. Invalid ORCID.

editorialbot commented 4 months ago

Paper file info:

📄 Wordcount for paper.md is 984

✅ The paper includes a Statement of need section

editorialbot commented 4 months ago

License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

editorialbot commented 4 months ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- None

MISSING DOIs

- No DOI given, and none found for title: MIMIC-IV, a freely accessible electronic health re...
- No DOI given, and none found for title: An Extensive Data Processing Pipeline for MIMIC-IV
- No DOI given, and none found for title: AMR: An \textitR package for working with antimicr...
- 10.1179/2047773215y.0000000030 may be a valid DOI for title: Antimicrobial resistance: a global multifaceted ph...
- No DOI given, and none found for title: MIMIC-IV

INVALID DOIs

- None
Kevin-Mattheus-Moerman commented 4 months ago

@anoopvelluv thanks for your submission to JOSS. Unfortunately, after review by the JOSS editorial team we've determined that this submission doesn't meet our substantial scholarly effort criterion.

One possible alternative to JOSS is to follow GitHub's guide on how to create a permanent archive and DOI for your software. This DOI can then be used by others to cite your work.

Kevin-Mattheus-Moerman commented 4 months ago

@editorialbot reject

editorialbot commented 4 months ago

Paper rejected.