[REVIEW]: AIgarMIC: a Python package for automated interpretation of agar dilution minimum inhibitory concentration testing

[editorialbot]

Submitting author: !--author-handle-->@agerada<!--end-author-handle-- (Alessandro Gerada) Repository: https://github.com/agerada/AIgarMIC Branch with paper.md (empty if default branch): Version: v1.1.1 Editor: !--editor-->@ppxasjsm<!--end-editor-- Reviewers: !--reviewers-list-->@gchure<!--end-reviewers-list-- Archive: 10.5281/zenodo.13628882

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Reviewers and authors:

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@gchure, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review. First of all you need to run this command in a separate comment to create the checklist:

@editorialbot generate my checklist

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Checklists

📝 Checklist for @gchure

[ppxasjsm]

Thanks!

[Kevin-Mattheus-Moerman]

@editorialbot set v1.1.1 as version

[editorialbot]

Done! version is now v1.1.1

[Kevin-Mattheus-Moerman]

@agerada as AEiC for JOSS I will now help to process this submission for acceptance in JOSS. I have checked this review, your repository, the archive link, and the paper. Most seems in order, however the below are some points that require your attention in relation to the ZENODO archive. Please do not create a new archive, simply edit the current:

• [x] Please edit the title of the ZENODO archive listing to match the paper title.
• [x] Please edit the set of authors for the ZENODO archive listing to match the paper authors.

[agerada]

Thank you @Kevin-Mattheus-Moerman, I have made the changes (title and authors) to the ZENODO archive (https://zenodo.org/doi/10.5281/zenodo.13628882).

[Kevin-Mattheus-Moerman]

@agerada thanks, all looks good now.

[Kevin-Mattheus-Moerman]

@editorialbot accept

[editorialbot]

Doing it live! Attempting automated processing of paper acceptance...

[editorialbot]

:warning: Couldn't acccept/publish paper. An error happened.

[Kevin-Mattheus-Moerman]

@editorialbot accept

[editorialbot]

Doing it live! Attempting automated processing of paper acceptance...

[editorialbot]

Ensure proper citation by uploading a plain text CITATION.cff file to the default branch of your repository.

If using GitHub, a Cite this repository menu will appear in the About section, containing both APA and BibTeX formats. When exported to Zotero using a browser plugin, Zotero will automatically create an entry using the information contained in the .cff file.

You can copy the contents for your CITATION.cff file here:

CITATION.cff

``` cff-version: "1.2.0" authors: - email: alessandro.gerada@liverpool.ac.uk family-names: Gerada given-names: Alessandro orcid: "https://orcid.org/0000-0002-6743-4271" - email: nharper@liverpool.ac.uk family-names: Harper given-names: Nicholas orcid: "https://orcid.org/0009-0000-1705-0619" - email: Alexander.Howard@liverpool.ac.uk family-names: Howard given-names: Alex orcid: "https://orcid.org/0000-0002-4195-6821" - email: hopew@liverpool.ac.uk family-names: Hope given-names: William orcid: "https://orcid.org/0000-0001-6187-878X" doi: 10.5281/zenodo.13628882 message: If you use this software, please cite our article in the Journal of Open Source Software. preferred-citation: authors: - email: alessandro.gerada@liverpool.ac.uk family-names: Gerada given-names: Alessandro orcid: "https://orcid.org/0000-0002-6743-4271" - email: nharper@liverpool.ac.uk family-names: Harper given-names: Nicholas orcid: "https://orcid.org/0009-0000-1705-0619" - email: Alexander.Howard@liverpool.ac.uk family-names: Howard given-names: Alex orcid: "https://orcid.org/0000-0002-4195-6821" - email: hopew@liverpool.ac.uk family-names: Hope given-names: William orcid: "https://orcid.org/0000-0001-6187-878X" date-published: 2024-09-16 doi: 10.21105/joss.06826 issn: 2475-9066 issue: 101 journal: Journal of Open Source Software publisher: name: Open Journals start: 6826 title: "AIgarMIC: a Python package for automated interpretation of agar dilution minimum inhibitory concentration assays" type: article url: "https://joss.theoj.org/papers/10.21105/joss.06826" volume: 9 title: "AIgarMIC: a Python package for automated interpretation of agar dilution minimum inhibitory concentration assays" ```

If the repository is not hosted on GitHub, a .cff file can still be uploaded to set your preferred citation. Users will be able to manually copy and paste the citation.

Find more information on .cff files here and here.

[editorialbot]

🐘🐘🐘 👉 Toot for this paper 👈 🐘🐘🐘

[editorialbot]

🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! 🚨🚨🚨

Here's what you must now do:

0. Check final PDF and Crossref metadata that was deposited :point_right: https://github.com/openjournals/joss-papers/pull/5885
1. Wait five minutes, then verify that the paper DOI resolves https://doi.org/10.21105/joss.06826
2. If everything looks good, then close this review issue.
3. Party like you just published a paper! 🎉🌈🦄💃👻🤘

Any issues? Notify your editorial technical team...

[Kevin-Mattheus-Moerman]

@agerada congratulations on this publication!

Thanks for editing @ppxasjsm !

And a special thanks to the reviewers: @gchure !!!

[editorialbot]

:tada::tada::tada: Congratulations on your paper acceptance! :tada::tada::tada:

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[agerada]

Thank you @Kevin-Mattheus-Moerman. Just wanted to say a quick thank you to @ppxasjsm and @gchure for their input on this work and the very constuctive reviews. I look forward to contributing to JOSS in the future.