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[PRE REVIEW]: gotranx - General ODE translator #6947

Open editorialbot opened 4 days ago

editorialbot commented 4 days ago

Submitting author: !--author-handle-->@finsberg<!--end-author-handle-- (Henrik Nicolay Topnes Finsberg) Repository: https://github.com/finsberg/gotranx Branch with paper.md (empty if default branch): Version: v1.0.0 Editor: Pending Reviewers: Pending Managing EiC: Daniel S. Katz

Status

status

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Markdown: [![status](https://joss.theoj.org/papers/40dc8d8287c6188eaab8149ed3bfe60b/status.svg)](https://joss.theoj.org/papers/40dc8d8287c6188eaab8149ed3bfe60b)

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Thanks for submitting your paper to JOSS @finsberg. Currently, there isn't a JOSS editor assigned to your paper.

@finsberg if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

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editorialbot commented 4 days ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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editorialbot commented 4 days ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.09 s (851.8 files/s, 224933.6 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
XML                              2             18            146          10123
Python                          53           1372           1612           5934
Markdown                         9            176              0            536
YAML                            10             51             19            238
TOML                             1             26              7            130
TeX                              1             13              0            129
C                                1             17             18            116
reStructuredText                 1             52             54             53
CMake                            1              6              1             14
-------------------------------------------------------------------------------
SUM:                            79           1731           1857          17273
-------------------------------------------------------------------------------

Commit count by author:

   190  Henrik Finsberg
    16  pre-commit-ci[bot]
     6  dependabot[bot]
editorialbot commented 4 days ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1137/1.9781611971224 is OK
- 10.1145/1089014.1089020 is OK
- 10.1038/s41592-019-0686-2 is OK
- 10.5334/jors.151 is OK
- 10.7554/eLife.48890 is OK
- 10.1007/3-540-33437-8 is OK
- 10.21105/joss.01848 is OK
- 10.1016/j.cmpb.2021.106223 is OK
- 10.1016/j.pbiomolbio.2004.01.004 is OK
- 10.15252/msb.20199110 is OK
- 10.7717/peerj-cs.103 is OK
- 10.1016/j.pbiomolbio.2015.12.008 is OK
- 10.1109/TBME.1978.326270 is OK

MISSING DOIs

- None

INVALID DOIs

- None
editorialbot commented 4 days ago

Paper file info:

πŸ“„ Wordcount for paper.md is 655

βœ… The paper includes a Statement of need section

editorialbot commented 4 days ago

License info:

πŸ”΄ Failed to discover a valid open source license

editorialbot commented 4 days ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 4 days ago

Five most similar historical JOSS papers:

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Simframe: A Python Framework for Scientific Simulations Submitting author: @stammler Handling editor: @taless474 (Retired) Reviewers: @schruste, @lucaferranti Similarity score: 0.7389

dfba: Software for efficient simulation of dynamic flux-balance analysis models in Python Submitting author: @davidtourigny Handling editor: @marcosvital (Active) Reviewers: @jdbrunner, @pstjohn, @synchon Similarity score: 0.7341

PyGDH: Python Grid Discretization Helper Submitting author: @kfhiga Handling editor: @melissawm (Retired) Reviewers: @JamieJQuinn, @zhaowei0566 Similarity score: 0.7283

SBMLtoODEpy: A software program for converting SBML models into ODE models in Python Submitting author: @ashleefv Handling editor: @mgymrek (Retired) Reviewers: @SirSharpest, @marouenbg Similarity score: 0.7195

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

danielskatz commented 4 days ago

πŸ‘‹ @finsberg - I don't see an open source license in your repo, or discussion of one in your README. JOSS requires an OSI-approved license for software that we review, so if you can add one, we can proceed, and if not, we will mark the submission as rejected.

finsberg commented 4 days ago

πŸ‘‹ @finsberg - I don't see an open source license in your repo, or discussion of one in your README. JOSS requires an OSI-approved license for software that we review, so if you can add one, we can proceed, and if not, we will mark the submission as rejected.

My apologies. I have now added MIT license to the repo

danielskatz commented 4 days ago

Thanks. I'll next look for an editor. While I do so, I think the link in your readme to the contributing guide is broken, and you also might want to mention the license in your readme.

danielskatz commented 4 days ago

πŸ‘‹ @prashjha - I know you are at your editing limit, but this seems like something you might be interested in, and one of your submissions doesn't seem active at this point, so I wonder if you could work on this one?

danielskatz commented 4 days ago

@editorialbot invite @prashjha as editor

editorialbot commented 4 days ago

Invitation to edit this submission sent!