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[PRE REVIEW]: BlueCelluLab: Biologically Detailed Neural Network Experimentation API #6956

Open editorialbot opened 5 days ago

editorialbot commented 5 days ago

Submitting author: !--author-handle-->@anilbey<!--end-author-handle-- (Mustafa Anıl Tuncel) Repository: https://github.com/BlueBrain/BlueCelluLab Branch with paper.md (empty if default branch): joss-paper Version: v2.6.16 Editor: Pending Reviewers: Pending Managing EiC: Kevin M. Moerman

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Markdown: [![status](https://joss.theoj.org/papers/effd553ca48734a2966d9d7ace3b05ff/status.svg)](https://joss.theoj.org/papers/effd553ca48734a2966d9d7ace3b05ff)

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Thanks for submitting your paper to JOSS @anilbey. Currently, there isn't a JOSS editor assigned to your paper.

@anilbey if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

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editorialbot commented 5 days ago

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editorialbot commented 5 days ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.25 s (639.0 files/s, 182666.0 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
JSON                            29              1              0          25703
Python                          99           2228           1809           8357
reStructuredText                 8            354            192           1939
Jupyter Notebook                 8              0           4422            576
YAML                             5             21             15            168
TeX                              1              9              0            149
Markdown                         5             34              0            100
TOML                             1              8              0             71
INI                              1              5              0             63
DOS Batch                        1              8              1             26
make                             2              4              7             17
CSV                              1              0              0             11
Bourne Shell                     1              4              0              8
-------------------------------------------------------------------------------
SUM:                           162           2676           6446          37188
-------------------------------------------------------------------------------

Commit count by author:

    71  Anil Tuncel
    56  anilbey
     9  Werner Van Geit
     6  dependabot[bot]
     5  ilkilic
     3  Alexis Arnaudon
     3  Aurélien Jaquier
     3  Eduard Šubert
     2  MikeG
     1  A Sato
     1  Darshan Mandge
     1  Kiliç Ilkan Fabrice
     1  eduard.subert
editorialbot commented 5 days ago

Paper file info:

📄 Wordcount for paper.md is 1268

✅ The paper includes a Statement of need section

editorialbot commented 5 days ago

License info:

🟡 License found: Other (Check here for OSI approval)

editorialbot commented 5 days ago 
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.3389/neuro.11.001.2009 is OK
- 10.3389/fninf.2017.00046 is OK
- 10.3389/fninf.2019.00063 is OK
- 10.3389/fninf.2022.884046 is OK
- 10.1371/journal.pcbi.1007696 is OK
- 10.5281/zenodo.10809263 is OK

MISSING DOIs

- No DOI given, and none found for title: The UNIX programming environment
- No DOI given, and none found for title: Agile software development: principles, patterns, ...
- 10.21236/ad0773837 may be a valid DOI for title: On the criteria to be used in decomposing systems ...
- No DOI given, and none found for title: Pep 484–type hints
- No DOI given, and none found for title: Adapting dynamic object-oriented languages to mixe...
- No DOI given, and none found for title: Pydantic

INVALID DOIs

- None
editorialbot commented 5 days ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 5 days ago

Five most similar historical JOSS papers:

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brains-py, A framework to support research on energy-efficient unconventional hardware for machine learning Submitting author: @ualegre Handling editor: @arfon (Active) Reviewers: @wob86, @sisco0 Similarity score: 0.7011

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⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

Kevin-Mattheus-Moerman commented 4 days ago

@anilbey Dear author, thanks for this submission. I am the AEiC on this track and here to help process the initial steps, and to find a handling editor. Before we proceed, please can you have a look at the following points:

Secondly, as you can see I have just added the waitlisted label. This is because currently all editors in this domain are preoccupied with other submissions. We will assign an editor as soon as one becomes available.

Kevin-Mattheus-Moerman commented 3 days ago

@britta-wstnr you are handling several other submissions already, but is this work something you could help edit once you are available? Thanks!

britta-wstnr commented 3 days ago

@Kevin-Mattheus-Moerman absolutely - if it's not a problem that I'll be on a 3 week summer leave soon?

anilbey commented 2 days ago

Hi @Kevin-Mattheus-Moerman thanks for mentioning the two points. I addressed the CONTRIBUTING file here https://github.com/BlueBrain/BlueCelluLab/pull/190.

anilbey commented 2 days ago

@editorialbot check references

editorialbot commented 2 days ago 
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.3389/neuro.11.001.2009 is OK
- 10.3389/fninf.2017.00046 is OK
- 10.3389/fninf.2019.00063 is OK
- 10.3389/fninf.2022.884046 is OK
- 10.1002/spe.4380090102 is OK
- 10.1371/journal.pcbi.1007696 is OK
- 10.1002/pfi.21408 is OK
- 10.1007/978-3-642-59412-0_26 is OK
- 10.5281/zenodo.10809263 is OK

MISSING DOIs

- No DOI given, and none found for title: Pep 484–type hints
- No DOI given, and none found for title: Adapting dynamic object-oriented languages to mixe...
- No DOI given, and none found for title: Pydantic

INVALID DOIs

- None
anilbey commented 2 days ago

I added the 3/6 of the missing DOIs. To my knowledge the remaining 3 don't have DOIs available.