Closed editorialbot closed 1 month ago
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Software report:
github.com/AlDanial/cloc v 1.90 T=0.05 s (1216.0 files/s, 276012.8 lines/s)
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Language files blank comment code
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R 35 472 1159 2524
TeX 2 161 0 1867
HTML 1 338 5 1725
Rmd 7 624 2084 1241
Markdown 5 171 0 579
YAML 2 29 18 128
CSV 6 0 0 40
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SUM: 58 1795 3266 8104
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Commit count by author:
235 Brauckhoff
70 devSJR
2 Michael Chirico
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.21105/joss.06394 is OK
- 10.32614/CRAN.package.biopixR is OK
- 10.21037/jlpm.2019.04.05 is OK
- 10.1016/j.biosx.2024.100484 is OK
- 10.32614/rj-2011-002 is OK
- 10.32614/RJ-2012-018 is OK
- 10.32614/CRAN.package.countcolors is OK
- 10.21105/joss.01012 is OK
- 10.1007/978-0-387-75936-4 is OK
- 10.1109/tsmc.1973.4309314 is OK
- 10.18637/jss.v021.i05 is OK
- 10.32614/CRAN.package.cluster is OK
- 10.1007/s00604-019-3449-y is OK
- 10.1080/17425247.2016.1192122 is OK
- 10.1007/s10544-018-0314-4 is OK
- 10.1007/s00604-014-1243-4 is OK
- 10.1038/76469 is OK
- 10.1007/s11356-020-08127-2 is OK
- 10.1038/s41598-019-41136-x is OK
- 10.1021/ac103277s is OK
- 10.3390/molecules201219766 is OK
- 10.1007/s00216-019-02199-x is OK
- 10.1007/10_2011_132 is OK
- 10.21037/jlpm.2018.11.01 is OK
- 10.21037/jlpm.2018.04.10 is OK
- 10.18637/jss.v049.i09 is OK
- 10.1198/106186007X178663 is OK
- 10.32614/RJ-2015-011 is OK
- 10.5281/ZENODO.12744222 is OK
MISSING DOIs
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: Tcl/Tk Interface
- No DOI given, and none found for title: RStudio: Integrated Development Environment for R
- No DOI given, and none found for title: Advanced R
- No DOI given, and none found for title: ’Radiomic’ Image Processing Toolbox
- No DOI given, and none found for title: magick: Advanced Graphics and Image-Processing in ...
- No DOI given, and none found for title: R Markdown
- No DOI given, and none found for title: foodwebr: Visualise Function Dependencies
INVALID DOIs
- None
Paper file info:
📄 Wordcount for paper.md
is 1986
✅ The paper includes a Statement of need
section
License info:
🟡 License found: GNU Lesser General Public License v3.0
(Check here for OSI approval)
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
Five most similar historical JOSS papers:
microViz: an R package for microbiome data visualization and statistics
Submitting author: @david-barnett
Handling editor: @lpantano (Active)
Reviewers: @marypiper, @yoonjeongcha
Similarity score: 0.7265
mxnorm: An R Package to Normalize Multiplexed Imaging Data
Submitting author: @ColemanRHarris
Handling editor: @osorensen (Active)
Reviewers: @askerdb, @tijeco
Similarity score: 0.7229
ijtiff: An R package providing TIFF I/O for ImageJ users
Submitting author: @rorynolan
Handling editor: @arfon (Active)
Reviewers: @arfon
Similarity score: 0.7187
MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows
Submitting author: @grabear
Handling editor: @lpantano (Active)
Reviewers: @CosteaPaul
Similarity score: 0.7042
Bedtoolsr: An R package for genomic data analysis and manipulation
Submitting author: @dphansti
Handling editor: @mgymrek (Retired)
Reviewers: @nhejazi, @mikmaksi
Similarity score: 0.6977
⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.
@Brauckhoff Dear author(s), thanks for this submission. I am the AEiC on this track and here to help process the initial steps. Before we proceed, please can you have a look at the following points:
.bib
file, and call @editorialbot check references
here to check them again. Please note that I've just waitlisted this submission. This is because all editors in this domain are currently handling other submissions. We'll assign an editor once once becomes available.
Dear @Kevin-Mattheus-Moerman, thanks for the handling. We found some references to complete.
We suggest as reviewers: ZhenchenHong Yannan-Chen Alanocallaghan singhkakan MaximLippeveld
@editorialbot check references
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
OK DOIs
- 10.21105/joss.06394 is OK
- 10.32614/CRAN.package.biopixR is OK
- 10.21037/jlpm.2019.04.05 is OK
- 10.1016/j.biosx.2024.100484 is OK
- 10.32614/rj-2011-002 is OK
- 10.32614/RJ-2012-018 is OK
- 10.32614/CRAN.package.countcolors is OK
- 10.21105/joss.01012 is OK
- 10.32614/CRAN.package.magick is OK
- 10.1007/978-0-387-75936-4 is OK
- 10.1109/tsmc.1973.4309314 is OK
- 10.18637/jss.v021.i05 is OK
- 10.32614/CRAN.package.cluster is OK
- 10.1007/s00604-019-3449-y is OK
- 10.1080/17425247.2016.1192122 is OK
- 10.1007/s10544-018-0314-4 is OK
- 10.1007/s00604-014-1243-4 is OK
- 10.1038/76469 is OK
- 10.1007/s11356-020-08127-2 is OK
- 10.1038/s41598-019-41136-x is OK
- 10.1021/ac103277s is OK
- 10.3390/molecules201219766 is OK
- 10.1007/s00216-019-02199-x is OK
- 10.1007/10_2011_132 is OK
- 10.21037/jlpm.2018.11.01 is OK
- 10.21037/jlpm.2018.04.10 is OK
- 10.18637/jss.v049.i09 is OK
- 10.1198/106186007X178663 is OK
- 10.32614/RJ-2015-011 is OK
- 10.5281/ZENODO.12744222 is OK
MISSING DOIs
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: Tcl/Tk Interface
- No DOI given, and none found for title: RStudio: Integrated Development Environment for R
- No DOI given, and none found for title: Advanced R
- No DOI given, and none found for title: ’Radiomic’ Image Processing Toolbox
- No DOI given, and none found for title: R Markdown
- No DOI given, and none found for title: foodwebr: Visualise Function Dependencies
INVALID DOIs
- None
@editorialbot generate pdf
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
Five most similar historical JOSS papers:
microViz: an R package for microbiome data visualization and statistics
Submitting author: @david-barnett
Handling editor: @lpantano (Active)
Reviewers: @marypiper, @yoonjeongcha
Similarity score: 0.7265
mxnorm: An R Package to Normalize Multiplexed Imaging Data
Submitting author: @ColemanRHarris
Handling editor: @osorensen (Active)
Reviewers: @askerdb, @tijeco
Similarity score: 0.7228
ijtiff: An R package providing TIFF I/O for ImageJ users
Submitting author: @rorynolan
Handling editor: @arfon (Active)
Reviewers: @arfon
Similarity score: 0.7187
MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows
Submitting author: @grabear
Handling editor: @lpantano (Active)
Reviewers: @CosteaPaul
Similarity score: 0.7041
Bedtoolsr: An R package for genomic data analysis and manipulation
Submitting author: @dphansti
Handling editor: @mgymrek (Retired)
Reviewers: @nhejazi, @mikmaksi
Similarity score: 0.6977
⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.
@editorialbot invite @mstimberg as editor
Invitation to edit this submission sent!
@Kevin-Mattheus-Moerman I am afraid I have to decline at this time – I am about to leave for summer holiday and will only be fully back in office in September.
@Kevin-Mattheus-Moerman I can take this on as editor if you're still looking
@editorialbot assign @fabian-s as editor
Assigned! @fabian-s is now the editor
:wave: @ColemanRHarris & @david-barnett
would you be willing to review this submission for JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html
Hi @fabian-s, thanks for reaching out. I am willing to review the submission for JOSS! What do you need from me?
Hi @fabian-s - I think for me the topic isn't a good fit with my expertise, I don't work with images. So I'll have to decline. Good luck with the review!
@ColemanRHarris thanks -- nothing for now, let me find a reviewer 2 first :)
@editorialbot add @ColemanRHarris as reviewer
@ColemanRHarris added to the reviewers list!
:wave: @askerdb, @tijeco
would any of you be willing to review this submission for JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html
@fabian-s , I'd love to!
that was quick, @tijeco! thanks!
@editorialbot add @tijeco as reviewer
@tijeco added to the reviewers list!
@editorialbot start review
OK, I've started the review over in https://github.com/openjournals/joss-reviews/issues/7074.
Submitting author: !--author-handle-->@Brauckhoff<!--end-author-handle-- (Tim Brauckhoff) Repository: https://github.com/Brauckhoff/biopixR Branch with paper.md (empty if default branch): Version: 1.1.0 Editor: !--editor-->@fabian-s<!--end-editor-- Reviewers: @ColemanRHarris, @tijeco Managing EiC: Kevin M. Moerman
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