openjournals / joss-reviews

Reviews for the Journal of Open Source Software
Creative Commons Zero v1.0 Universal
707 stars 37 forks source link

[PRE REVIEW]: reflectorch: a deep learning package for X-ray and neutron reflectometry #7089

Open editorialbot opened 1 month ago

editorialbot commented 1 month ago

Submitting author: !--author-handle-->@valentinsingularity<!--end-author-handle-- (Valentin Munteanu) Repository: https://github.com/schreiber-lab/reflectorch Branch with paper.md (empty if default branch): Version: v1.2.1 Editor: !--editor-->@likeajumprope<!--end-editor-- Reviewers: Pending Managing EiC: Chris Vernon

Status

status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/ec70c26c483ce71520590229050c40eb"><img src="https://joss.theoj.org/papers/ec70c26c483ce71520590229050c40eb/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/ec70c26c483ce71520590229050c40eb/status.svg)](https://joss.theoj.org/papers/ec70c26c483ce71520590229050c40eb)

Author instructions

Thanks for submitting your paper to JOSS @valentinsingularity. Currently, there isn't a JOSS editor assigned to your paper.

@valentinsingularity if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSS submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

@editorialbot commands
editorialbot commented 1 month ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf
editorialbot commented 1 month ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1051/jphysrad:01950001107030700 is OK
- 10.1107/s1600576724002115 is OK
- 10.1107/S160057752300749X is OK
- 10.1107/S1600576722002230 is OK
- 10.1107/S1600576724001171 is OK
- 10.1107/S1600576722006653 is OK
- 10.1107/S1600576718017296 is OK
- 10.5281/ZENODO.4329338 is OK

MISSING DOIs

- None

INVALID DOIs

- None
editorialbot commented 1 month ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.26 s (1458.8 files/s, 272812.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                            47           7973            191          21802
YAML                           149           1071           1834          12941
Python                          89           2076           1069           7105
CSS                             12            809            113           2904
PO File                         45           1007              0           2284
JavaScript                      16            197            299           1279
Jupyter Notebook                 4              0           4484            428
Markdown                         4             67              0            181
TeX                              1              8              0            101
CSV                              1              0              0             98
TOML                             1              5              0             53
SVG                              6              0              1             30
Dockerfile                       1              4              0              9
reStructuredText                 1              1             75              2
-------------------------------------------------------------------------------
SUM:                           377          13218           8066          49217
-------------------------------------------------------------------------------

Commit count by author:

   267  Valentin Munteanu
   169  Vladimir Starostin
    16  valentinsingularity
     7  StarostinV
     7  cvoelt
     3  Anastasia Ragulskaya
     1  constantin
editorialbot commented 1 month ago

Paper file info:

📄 Wordcount for paper.md is 1244

✅ The paper includes a Statement of need section

editorialbot commented 1 month ago

License info:

✅ License found: MIT License (Valid open source OSI approved license)

editorialbot commented 1 month ago

:warning: An error happened when generating the pdf. Author (Dmitry Lapkin) is missing affiliation.

valentinsingularity commented 1 month ago

@editorialbot commands

editorialbot commented 1 month ago

Hello @valentinsingularity, here are the things you can ask me to do:


# List all available commands
@editorialbot commands

# Get a list of all editors's GitHub handles
@editorialbot list editors

# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist

# Set a value for branch
@editorialbot set joss-paper as branch

# Run checks and provide information on the repository and the paper file
@editorialbot check repository

# Check the references of the paper for missing DOIs
@editorialbot check references

# Generates the pdf paper
@editorialbot generate pdf

# Generates a LaTeX preprint file
@editorialbot generate preprint

# Get a link to the complete list of reviewers
@editorialbot list reviewers
valentinsingularity commented 1 month ago

@editorialbot generate pdf

editorialbot commented 1 month ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 1 month ago

Five most similar historical JOSS papers:

xrdfit: A Python package for fitting synchrotron X-ray diffraction spectra Submitting author: @merrygoat Handling editor: @jgostick (Active) Reviewers: @KedoKudo, @mikapfl Similarity score: 0.7135

Reel1.0 - A visualization tool for evaluating powder diffraction refinements Submitting author: @fgjorup Handling editor: @rkurchin (Active) Reviewers: @cmbiwer, @mikapfl Similarity score: 0.7117

xtal2png: A Python package for representing crystal structure as PNG files Submitting author: @sgbaird Handling editor: @rkurchin (Active) Reviewers: @dandavies99, @PeterKraus Similarity score: 0.7100

islatu: A Python package for the reduction of reflectometry data Submitting author: @RBrearton Handling editor: @jgostick (Active) Reviewers: @andyfaff, @daguiam Similarity score: 0.6983

Lightshow: a Python package for generating computational x-ray absorption spectroscopy input files Submitting author: @matthewcarbone Handling editor: @ppxasjsm (Active) Reviewers: @maurov, @larsenkg Similarity score: 0.6949

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

crvernon commented 1 month ago

@editorialbot invite @likeajumprope as editor

:wave: @likeajumprope this sounds like one you may wish to edit. Can you take this one on?

editorialbot commented 1 month ago

Invitation to edit this submission sent!

crvernon commented 1 month ago

Just following back up on this one @likeajumprope ...

👋 @likeajumprope this sounds like one you may wish to edit. Can you take this one on?

likeajumprope commented 1 month ago

Just following back up on this one @likeajumprope ...

👋 @likeajumprope this sounds like one you may wish to edit. Can you take this one on?

Ah sure - apologies I have been on summer leave

likeajumprope commented 1 month ago

@editorialbot assign me as editor

editorialbot commented 1 month ago

Assigned! @likeajumprope is now the editor

crvernon commented 1 month ago

No problem @likeajumprope and thank you!!