[PRE REVIEW]: SLAP2 Utils: Tools for Processing SLAP2 Data

[editorialbot]

Submitting author: !--author-handle-->@peter-hogg<!--end-author-handle-- (Peter William Hogg) Repository: https://github.com/Peter-Hogg/SLAP2_Utils Branch with paper.md (empty if default branch): Version: 0.3.0 Editor: !--editor-->@mooniean<!--end-editor-- Reviewers: Pending Managing EiC: Kevin M. Moerman

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.09 s (1363.6 files/s, 198583.7 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
SVG                              2              0              0           3153
Python                          35            980           1335           2354
OpenCL                           1              0             12           1727
HTML                             8            217             24           1350
MATLAB                          23            613            546           1301
JavaScript                      12            138            228            911
CSS                              4            190             35            780
YAML                             4             19              4            120
TeX                              1              9              0             98
CSV                              4              0              0             97
reStructuredText                17             52             70             84
Markdown                         3             30              0             73
Jupyter Notebook                 1              0            494             49
TOML                             1              4              0             33
DOS Batch                        1              8              1             26
make                             1              4              7              9
-------------------------------------------------------------------------------
SUM:                           118           2264           2756          12165
-------------------------------------------------------------------------------

Commit count by author:

   209  Jerry Tong
   116  peter-hogg
    50  Peter
    16  Peter Hogg
     4  unknown
     2  praiseful

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 1457

✅ The paper includes a Statement of need section

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1038/s41592-019-0493-9 is OK
- 10.7717/peerj.453 is OK
- 10.1038/s41586-020-2649-2 is OK
- 10.1038/s41592-019-0686-2 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: SLAP2 – Two Photon Microscope Kit
- No DOI given, and none found for title: The phase correlation image alignment method
- No DOI given, and none found for title: CuPy: A NumPy-Compatible Library for NVIDIA GPU Ca...
- No DOI given, and none found for title: PyTorch: An Imperative Style, High-Performance Dee...
- No DOI given, and none found for title: Python and HDF5

❌ MISSING DOIs

- None

❌ INVALID DOIs

- None

[editorialbot]

License info:

✅ License found: Mozilla Public License 2.0 (Valid open source OSI approved license)

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[editorialbot]

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⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[Peter-Hogg]

List of Potential Reviewers:

• Ian Hunt-Isaak
• James Kerns
• Haykel Snoussi
• Dani Bodor
• Ajinkya Kadu

@editorialbot commands

[Kevin-Mattheus-Moerman]

@editorialbot invite @sneakers-the-rat as editor

[editorialbot]

Invitation to edit this submission sent!

[Kevin-Mattheus-Moerman]

@sneakers-the-rat :wave: do you think you can help edit this one? Thanks

[Kevin-Mattheus-Moerman]

@sneakers-the-rat :wave:

[Kevin-Mattheus-Moerman]

@editorialbot invite @mooniean as editor

[mooniean]

@editorialbot assign me as editor

[editorialbot]

Assigned! @mooniean is now the editor

[mooniean]

Hi 👋 @ianhi @jrkerns @H-Snoussi - would you be available and interested in reviewing this submission for the Journal of Open Source Software?

SLAP2 Utils: Tools for Processing SLAP2 Data https://github.com/openjournals/joss-reviews/issues/7152

Thanks in advance!

[H-Snoussi]

Hello Beatriz,

Unfortunately, this is outside my expertise.

Best regards, Haykel

On Tue, Oct 15, 2024 at 3:49 AM Beatriz Costa Gomes < @.***> wrote:

Hi 👋 @ianhi https://github.com/ianhi @jrkerns https://github.com/jrkerns @H-Snoussi https://github.com/H-Snoussi - would you be available and interested in reviewing this submission for the Journal of Open Source Software?

SLAP2 Utils: Tools for Processing SLAP2 Data https://github.com/openjournals/joss-reviews/issues/7152

7152 https://github.com/openjournals/joss-reviews/issues/7152

Thanks in advance!

— Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/7152#issuecomment-2413141586, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEZIGBXZN3ZDDD3MMWSG2H3Z3TCHLAVCNFSM6AAAAABNHZUXEOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDIMJTGE2DCNJYGY . You are receiving this because you were mentioned.Message ID: @.***>

[jrkerns]

Yes, I can review this.

[ianhi]

I could potentially review this - but only on the caveat that I may have very slow response times. I'm both attempting to finish grad school in the next few months as well as have a wedding in December. So in sum, if someone else is available please go with them, but I'm happy to serve as a (potentially slow to review) backup

[mooniean]

@ianhi thank you! I'll ask the next names on the list @Peter-Hogg suggested, but I'll keep you in mind and thank you for being upfront!

[mooniean]

Hi 👋 @ajinkyakadu - would you be available and interested in reviewing this submission for the Journal of Open Source Software?

https://github.com/openjournals/joss-reviews/issues/7152 https://github.com/openjournals/joss-reviews/issues/7152

Thanks in advance!

[Kevin-Mattheus-Moerman]

@openjournals/dev an editor has been assigned here but this one is still showing up on the dashboard as unassigned. Can you check what is happening? Thanks. Side note, the invitation to @mooniean did not give me the normal confirm message.

@mooniean this does not influence anything here.

[xuanxu]

an editor has been assigned here but this one is still showing up on the dashboard as unassigned.

fixed!

[H-Snoussi]

Would you please remove my email from this loop. Thanks.

On Tue, Oct 22, 2024, 4:45 AM Juanjo Bazán @.***> wrote:

an editor has been assigned here but this one is still showing up on the dashboard as unassigned.

fixed!

— Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/7152#issuecomment-2428650082, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEZIGBQWUMZRODKFVNDK7IDZ4YGBFAVCNFSM6AAAAABNHZUXEOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDIMRYGY2TAMBYGI . You are receiving this because you were mentioned.Message ID: @.***>

[ajinkyakadu]

Hi @mooniean, the work looks really interesting; but I currently don't have a bandwidth.

[mooniean]

Hi @ThFriedrich ! Would you be available and interested in reviewing this submission for the Journal of Open Source Software?

SLAP2 Utils: Tools for Processing SLAP2 Data

https://github.com/openjournals/joss-reviews/issues/7152

Thanks in advance!

[H-Snoussi]

Again, please remove my email from this loop. Thanks.

On Mon, Oct 28, 2024 at 11:52 AM Beatriz Costa Gomes < @.***> wrote:

Hi @ThFriedrich https://github.com/ThFriedrich ! Would you be available and interested in reviewing this submission for the Journal of Open Source Software?

SLAP2 Utils: Tools for Processing SLAP2 Data

7152 https://github.com/openjournals/joss-reviews/issues/7152

Thanks in advance!

— Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/7152#issuecomment-2441972904, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEZIGBRKOJXKHNCCLV57P4DZ5ZFRNAVCNFSM6AAAAABNHZUXEOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDINBRHE3TEOJQGQ . You are receiving this because you were mentioned.Message ID: @.***>

[danielskatz]

@H-Snoussi - you can go to the GitHub page for this issue (see the bottom of the email) and then turn off notifications (see the image below which is the right side of the page, which show the unsubscribe from notifications button). No one else can do this for you - sorry.

[ThFriedrich]

Hi @ThFriedrich ! Would you be available and interested in reviewing this submission for the Journal of Open Source Software?

SLAP2 Utils: Tools for Processing SLAP2 Data

7152

Thanks in advance!

This looks interesting, but I am not familiar with slap2. For this kind of data-exploration tools, some example dataset for testing the software would be nice btw..

[mooniean]

Thank you for checking it anyway!

@ianhi even with slow response times, are you up for reviewing?

[Peter-Hogg]

@ThFriedrich, we have a sample data file in the repo's example folder. We are always happy to provide more data as needed.