[PRE REVIEW]: Tree Explorer (T-REX): Bridging Phylogenetic and Phenotypic Data for Enhanced Analysis and Interpretation

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Submitting author: !--author-handle-->@DamianJM<!--end-author-handle-- (Damian John Magill) Repository: https://github.com/DamianJM/T-REX/ Branch with paper.md (empty if default branch): main Version: v1.0.0 Editor: Pending Reviewers: Pending Managing EiC: Kevin M. Moerman

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.01 s (340.5 files/s, 94456.8 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
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Python                           1            149            175            812
Markdown                         2             42              0            109
TeX                              1              6              0             70
YAML                             1              1              4             19
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SUM:                             5            198            179           1010
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Commit count by author:

    15  DamianJM

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Paper file info:

📄 Wordcount for paper.md is 885

✅ The paper includes a Statement of need section

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License info:

🔴 Failed to discover a valid open source license

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- None

🟡 SKIP DOIs

- No DOI given, and none found for title: ETE 3: reconstruction, analysis, and visualization...
- No DOI given, and none found for title: Interactive Tree Of Life (iTOL) v5: an online tool...

❌ MISSING DOIs

- 10.1093/bioinformatics/17.8.754 may be a valid DOI for title: MRBAYES: Bayesian inference of phylogenetic trees
- 10.1038/s41576-020-0233-0 may be a valid DOI for title: Phylogenetic tree building in the genomic age
- 10.1093/molbev/msu300 may be a valid DOI for title: IQ-TREE: a fast and effective stochastic algorithm...
- 10.1093/bioinformatics/btu033 may be a valid DOI for title: RAxML version 8: a tool for phylogenetic analysis ...
- 10.1093/molbev/msab120 may be a valid DOI for title: MEGA11: molecular evolutionary genetics analysis v...

❌ INVALID DOIs

- None

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:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

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