[PRE REVIEW]: MIRTorch: A Differentiable Medical Image Reconstruction Toolbox

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Submitting author: @ GuanhuaW (Guanhua Wang) Repository: https://github.com/guanhuaw/MIRTorch Branch with paper.md (empty if default branch): feature/joss Version: v0.1.2 Editor: Pending Reviewers: Pending Managing EiC: Kevin M. Moerman

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.08 s (1306.8 files/s, 176821.0 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          44           1435           2496           6130
Jupyter Notebook                 6              0           2343            631
Markdown                         4            111              0            236
YAML                             6             27             18            187
reStructuredText                47            547            496            111
TeX                              1             10              0            104
TOML                             1              8              0             74
DOS Batch                        1              8              1             26
make                             1              4              7              9
-------------------------------------------------------------------------------
SUM:                           111           2150           5361           7508
-------------------------------------------------------------------------------

Commit count by author:

    39  m5520
    36  neelsh
    29  Guanhua
    29  guanhuaw
    18  Keyue Zhu
     5  quickstep
     4  SoniaMinseoKim
     3  Zongyu Li
     1  GuanhuaW
     1  Jeff Fessler
     1  nnmurthy
     1  ray@omni

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1109/TMI.2018.2833635 is OK
- 10.1109/TMI.2018.2865356 is OK
- 10.1002/mrm.29645 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Michigan Image Reconstruction Toolbox
- No DOI given, and none found for title: SigPy: a python package for high performance itera...
- No DOI given, and none found for title: The BART toolbox for computational magnetic resona...

❌ MISSING DOIs

- 10.1201/9781351069397-24 may be a valid DOI for title: Methods of conjugate gradients for solving linear ...
- 10.1137/080716542 may be a valid DOI for title: A fast iterative shrinkage-thresholding algorithm ...
- 10.1007/s10851-010-0251-1 may be a valid DOI for title: A first-order primal-dual algorithm for convex pro...
- 10.1561/9781601987174 may be a valid DOI for title: Proximal algorithms
- 10.1002/mrm.24389 may be a valid DOI for title: Gadgetron: an open source framework for medical im...

❌ INVALID DOIs

- None

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 717

✅ The paper includes a Statement of need section

[editorialbot]

License info:

🟡 License found: Other (Check here for OSI approval)

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[editorialbot]

Five most similar historical JOSS papers:

DIRECT: Deep Image REConstruction Toolkit Submitting author: @georgeyiasemis Handling editor: @osorensen (Active) Reviewers: @estenhl, @sairamgeethanath Similarity score: 0.7507

Radial Interstices Enable Speedy Low-volume Imaging Submitting author: @spinicist Handling editor: @emdupre (Active) Reviewers: @uecker, @MartinK84 Similarity score: 0.7473

ivadomed: A Medical Imaging Deep Learning Toolbox Submitting author: @charleygros Handling editor: @cMadan (Retired) Reviewers: @NMontanaBrown, @justusschock, @lbugnon Similarity score: 0.7420

MRdataset : A unified and user-friendly interface to medical imaging datasets Submitting author: @sinhaharsh Handling editor: @mstimberg (Active) Reviewers: @htwangtw, @djmannion Similarity score: 0.7300

elsa: an elegant framework for tomographic reconstruction Submitting author: @ner0-m Handling editor: @jbytecode (Active) Reviewers: @uellue, @DanNixon Similarity score: 0.7288

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.