Closed editorialbot closed 1 month ago
editorialbot
commented
1 month ago Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.
For a list of things I can do to help you, just type:
@editorialbot commandsFor example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:
@editorialbot generate pdfSoftware report:
github.com/AlDanial/cloc v 1.90 T=0.02 s (1310.5 files/s, 201948.3 lines/s)
-------------------------------------------------------------------------------
Language files blank comment code
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HTML 1 36 2 620
CSV 2 0 0 601
C++ 9 56 21 481
Markdown 5 138 0 479
TeX 1 32 0 282
Python 4 62 17 271
Cython 1 64 167 172
Rmd 2 76 142 128
Jupyter Notebook 2 0 495 105
R 2 31 43 98
TOML 1 1 0 3
-------------------------------------------------------------------------------
SUM: 30 496 887 3240
-------------------------------------------------------------------------------Commit count by author:
32 Aleksei Luchinskii
3 LuchinskyPaper file info:
📄 Wordcount for paper.md is 3127
✅ The paper includes a Statement of need section
editorialbot
commented
1 month ago License info:
🔴 Failed to discover a valid open source license
editorialbot
commented
1 month ago Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
✅ OK DOIs
- 10.1145/2582112.2582128 is OK
- 10.1090/S0273-0979-09-01249-X is OK
- 10.1007/s10444-021-09893-4 is OK
- 10.3389/frai.2021.667963 is OK
- 10.3389/frai.2021.681108 is OK
- 10.32614/CRAN.package.TDAvec is OK
- 10.32614/CRAN.package.TDA is OK
- 10.21105/joss.00860 is OK
- 10.32614/cran.package.tdakit is OK
- 10.32614/CRAN.package.tdaunif is OK
- 10.32614/cran.package.tdapplied is OK
- 10.32614/CRAN.package.ripserr is OK
- 10.1016/j.patcog.2020.107509 is OK
- 10.1016/j.patrec.2014.07.001 is OK
- 10.1007/978-3-642-40193-0_6 is OK
- 10.1007/s41468-021-00071-5 is OK
- 10.32614/CRAN.package.Rcpp is OK
- 10.5281/zenodo.2533369 is OK
🟡 SKIP DOIs
- No DOI given, and none found for title: Statistical topological data analysis using persis...
- No DOI given, and none found for title: Persistence images: A stable vector representation...
- No DOI given, and none found for title: kernelTDA: Statistical Learning with Kernel for Pe...
- No DOI given, and none found for title: TDAmapper: Topological Data Analysis using Mapper
- No DOI given, and none found for title: A computationally efficient framework for vector r...
- No DOI given, and none found for title: ggplot2: Elegant Graphics for Data Analysis
- No DOI given, and none found for title: Awesome-TDA
- No DOI given, and none found for title: giotto-tda:: A topological data analysis toolkit f...
- No DOI given, and none found for title: A lean persistent homology library for python
- No DOI given, and none found for title: GUDHI User and Reference Manual
- No DOI given, and none found for title: Dionysus 2 – library for computing persistent homo...
- No DOI given, and none found for title: Persim 0.3.7
- No DOI given, and none found for title: Python interface to TDAvec library
❌ MISSING DOIs
- 10.1007/978-3-540-33259-6_7 may be a valid DOI for title: Computational topology: an introduction
- 10.21105/joss.01315 may be a valid DOI for title: Kepler Mapper: A flexible Python implementation of...
❌ INVALID DOIs
- None
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
editorialbot
commented
1 month ago Five most similar historical JOSS papers:
TDApplied: An R package for machine learning and inference with persistence diagrams
Submitting author: @shaelebrown
Handling editor: @mahfuz05062 (Active)
Reviewers: @EduPH, @peekxc
Similarity score: 0.7560
TDAstats: R pipeline for computing persistent homology in topological data analysis
Submitting author: @rrrlw
Handling editor: @leeper (Retired)
Reviewers: @corybrunson
Similarity score: 0.7534
Ripserer.jl: flexible and efficient persistent homology computation in Julia
Submitting author: @mtsch
Handling editor: @VivianePons (Retired)
Reviewers: @juliohm, @sauln
Similarity score: 0.7081
giotto-deep: A Python Package for Topological Deep Learning
Submitting author: @matteocao
Handling editor: @osorensen (Active)
Reviewers: @EduPH, @leotrs, @ismailguzel
Similarity score: 0.6846
TLViz: Visualising and analysing tensor decomposition models with Python
Submitting author: @marieroald
Handling editor: @faroit (Active)
Reviewers: @sara-02, @yiitozer
Similarity score: 0.6751
⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.
ALuchinsky
commented
1 month ago @editorialbot commands
editorialbot
commented
1 month ago Hello @ALuchinsky, here are the things you can ask me to do:
# List all available commands
@editorialbot commands
# Get a list of all editors's GitHub handles
@editorialbot list editors
# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist
# Set a value for branch
@editorialbot set joss-paper as branch
# Run checks and provide information on the repository and the paper file
@editorialbot check repository
# Check the references of the paper for missing DOIs
@editorialbot check references
# Generates the pdf paper
@editorialbot generate pdf
# Generates a LaTeX preprint file
@editorialbot generate preprint
# Get a link to the complete list of reviewers
@editorialbot list reviewers
@editorialbot check references
editorialbot
commented
1 month ago Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
✅ OK DOIs
- 10.1145/2582112.2582128 is OK
- 10.1090/S0273-0979-09-01249-X is OK
- 10.1007/s10444-021-09893-4 is OK
- 10.3389/frai.2021.667963 is OK
- 10.3389/frai.2021.681108 is OK
- 10.32614/CRAN.package.TDAvec is OK
- 10.32614/CRAN.package.TDA is OK
- 10.21105/joss.00860 is OK
- 10.32614/cran.package.tdakit is OK
- 10.32614/CRAN.package.tdaunif is OK
- 10.32614/cran.package.tdapplied is OK
- 10.32614/CRAN.package.ripserr is OK
- 10.1016/j.patcog.2020.107509 is OK
- 10.1016/j.patrec.2014.07.001 is OK
- 10.1007/978-3-642-40193-0_6 is OK
- 10.1007/s41468-021-00071-5 is OK
- 10.32614/CRAN.package.Rcpp is OK
- 10.5281/zenodo.2533369 is OK
🟡 SKIP DOIs
- No DOI given, and none found for title: Statistical topological data analysis using persis...
- No DOI given, and none found for title: Persistence images: A stable vector representation...
- No DOI given, and none found for title: kernelTDA: Statistical Learning with Kernel for Pe...
- No DOI given, and none found for title: TDAmapper: Topological Data Analysis using Mapper
- No DOI given, and none found for title: A computationally efficient framework for vector r...
- No DOI given, and none found for title: ggplot2: Elegant Graphics for Data Analysis
- No DOI given, and none found for title: Awesome-TDA
- No DOI given, and none found for title: giotto-tda:: A topological data analysis toolkit f...
- No DOI given, and none found for title: A lean persistent homology library for python
- No DOI given, and none found for title: GUDHI User and Reference Manual
- No DOI given, and none found for title: Dionysus 2 – library for computing persistent homo...
- No DOI given, and none found for title: Persim 0.3.7
- No DOI given, and none found for title: Python interface to TDAvec library
❌ MISSING DOIs
- 10.1007/978-3-540-33259-6_7 may be a valid DOI for title: Computational topology: an introduction
- 10.21105/joss.01315 may be a valid DOI for title: Kepler Mapper: A flexible Python implementation of...
❌ INVALID DOIs
- None
@editorialbot check references
editorialbot
commented
1 month ago Reference check summary (note 'MISSING' DOIs are suggestions that need verification):
✅ OK DOIs
- 10.48550/arXiv.1207.6437 is OK
- 10.1145/2582112.2582128 is OK
- 10.48550/arXiv.1507.06217 is OK
- 10.1090/S0273-0979-09-01249-X is OK
- 10.1007/s10444-021-09893-4 is OK
- 10.3389/frai.2021.667963 is OK
- 10.3389/frai.2021.681108 is OK
- 10.32614/CRAN.package.TDAvec is OK
- 10.32614/CRAN.package.TDA is OK
- 10.21105/joss.00860 is OK
- 10.32614/cran.package.tdakit is OK
- 10.32614/CRAN.package.tdaunif is OK
- 10.32614/cran.package.tdapplied is OK
- 10.32614/CRAN.package.ripserr is OK
- 10.1016/j.patcog.2020.107509 is OK
- 10.1016/j.patrec.2014.07.001 is OK
- 10.48550/arXiv.2109.08239 is OK
- 10.1007/978-3-642-40193-0_6 is OK
- 10.1007/s41468-021-00071-5 is OK
- 10.1007/978-3-319-24277-4 is OK
- 10.32614/CRAN.package.Rcpp is OK
- 10.21105/joss.01315 is OK
- 10.5281/zenodo.2533369 is OK
🟡 SKIP DOIs
- No DOI given, and none found for title: kernelTDA: Statistical Learning with Kernel for Pe...
- No DOI given, and none found for title: TDAmapper: Topological Data Analysis using Mapper
- No DOI given, and none found for title: Awesome-TDA
- No DOI given, and none found for title: giotto-tda:: A topological data analysis toolkit f...
- No DOI given, and none found for title: A lean persistent homology library for python
- No DOI given, and none found for title: GUDHI User and Reference Manual
- No DOI given, and none found for title: Dionysus 2 – library for computing persistent homo...
- No DOI given, and none found for title: Persim 0.3.7
- No DOI given, and none found for title: Python interface to TDAvec library
❌ MISSING DOIs
- 10.1007/978-3-540-33259-6_7 may be a valid DOI for title: Computational topology: an introduction
❌ INVALID DOIs
- None
crvernon
commented
1 month ago @editorialbot query scope
👋 @ALuchinsky - I am going to run this one by our larger editorial board due to it's smaller code base to ensure it meets our substantial scholarly effort requirement. This should take about two weeks at the most. I'll let you know what I hear back ASAP.
editorialbot
commented
1 month ago Submission flagged for editorial review.
crvernon
commented
1 month ago @editorialbot reject
:wave: @ALuchinsky - After reviewing this with our larger editorial board, we must reject this submission at this time due to it not meeting our substantial scholarly effort requirements partially due to the low lines of code count.
Best wishes for your future development activities and thanks for submitting to JOSS.
editorialbot
commented
1 month ago Paper rejected.
Submitting author: !--author-handle-->@ALuchinsky<!--end-author-handle-- (Alexey Luchinsky) Repository: https://github.com/ALuchinsky/tdavec Branch with paper.md (empty if default branch): Version: v1.0.0 Editor: Pending Reviewers: Pending Managing EiC: Chris Vernon
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