[PRE REVIEW]: GraphBin-Tk: assembly graph-based metagenomic binning toolkit

[editorialbot]

Submitting author: !--author-handle-->@Vini2<!--end-author-handle-- (Vijini Mallawaarachchi) Repository: https://github.com/metagentools/gbintk Branch with paper.md (empty if default branch): JOSS Version: v1.0.0 Editor: Pending Reviewers: Pending Managing EiC: Kevin M. Moerman

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.07 s (832.8 files/s, 153218.6 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
CSV                              8              0              0           3195
Python                          14            690            310           2312
SVG                              3              0             23           1500
Markdown                        22            437              0           1095
TeX                              1             25              0            385
YAML                             7             29             56            188
TOML                             1              4              1             53
-------------------------------------------------------------------------------
SUM:                            56           1185            390           8728
-------------------------------------------------------------------------------

Commit count by author:

   209  Vijini Mallawaarachchi
     5  Yapeng Lang
     3  Robert McArthur
     2  GavinHuttley
     1  Anuradha Wickramarachchi
     1  KatherineCaley

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1186/1471-2164-14-600 is OK
- 10.1038/s41592-020-00971-x is OK
- 10.1093/bioinformatics/btv033 is OK
- 10.1093/bioinformatics/btaa180 is OK
- 10.4230/LIPIcs.WABI.2020.8 is OK
- 10.1186/s13015-021-00185-6 is OK
- 10.1007/978-3-031-04749-7_5 is OK
- 10.1089/cmb.2022.0262 is OK
- 10.1093/bib/bbae372 is OK
- 10.1093/gigascience/giy069 is OK
- 10.1101/gr.213959.116 is OK
- 10.3389/fmicb.2023.963173 is OK
- 10.21105/joss.06235 is OK
- 10.1038/s41592-018-0046-7 is OK
- 10.1038/nmeth.3103 is OK
- 10.1093/bioinformatics/btv638 is OK
- 10.7717/peerj.7359 is OK
- 10.1093/bioinformatics/btad209 is OK
- 10.1609/aaai.v36i4.20388 is OK
- 10.1038/s41467-017-02018-w is OK
- 10.1038/s41467-024-50276-2 is OK
- 10.1016/j.compbiolchem.2022.107734 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Encoding Unitig-level Assembly Graphs with Heterop...
- No DOI given, and none found for title: WWOOD/coverm: Read coverage calculator for metagen...

❌ MISSING DOIs

- None

❌ INVALID DOIs

- None

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 1939

✅ The paper includes a Statement of need section

[editorialbot]

License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[editorialbot]

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[Vini2]

Suggestions for potential reviewers.

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