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[PRE REVIEW]: High-performance estimation of Higher-Order Interactions from multivariate data #7298

Open editorialbot opened 3 days ago

editorialbot commented 3 days ago

Submitting author: !--author-handle-->@EtienneCmb<!--end-author-handle-- (Etienne Combrisson) Repository: https://github.com/brainets/hoi Branch with paper.md (empty if default branch): paper Version: v0.0.1 Editor: Pending Reviewers: Pending Managing EiC: Chris Vernon

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Markdown: [![status](https://joss.theoj.org/papers/cdae325c0d48fdcb8c09802b7744554f/status.svg)](https://joss.theoj.org/papers/cdae325c0d48fdcb8c09802b7744554f)

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editorialbot commented 3 days ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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editorialbot commented 3 days ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.05 s (1521.1 files/s, 157944.4 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          45           1100           1853           2572
SVG                              1              0              0            729
TeX                              2             50              0            465
reStructuredText                14            187            144            207
YAML                             5             28             11            123
Markdown                         2             17              0             71
HTML                             2              6              1             48
DOS Batch                        1              8              1             26
TOML                             1              1              0             16
make                             1              4              7              9
-------------------------------------------------------------------------------
SUM:                            74           1401           2017           4266
-------------------------------------------------------------------------------

Commit count by author:

   139  EtienneCmb
    66  Dishie2498
    10  Pierre Robiglio
     9  Mattehub
     7  Onur Ates
     7  dependabot[bot]
     3  Matteo NERI
     2  Andrea Brovelli
     1  Christian Ferreyra
     1  Etienne Combrisson
editorialbot commented 3 days ago

Paper file info:

📄 Wordcount for paper.md is 774

✅ The paper includes a Statement of need section

editorialbot commented 3 days ago

License info:

✅ License found: BSD 3-Clause "New" or "Revised" License (Valid open source OSI approved license)

editorialbot commented 3 days ago

:warning: An error happened when generating the pdf. Problem with affiliations for Christian Ferreyra, perhaps the affiliations index need quoting?.

editorialbot commented 3 days ago 
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1103/PhysRevE.100.032305 is OK
- 10.3390/e21090869 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Towards an extended taxonomy of information dynami...
- No DOI given, and none found for title: Nonnegative decomposition of multivariate informat...
- No DOI given, and none found for title: The physics of higher-order interactions in comple...
- No DOI given, and none found for title: A Tutorial for Information Theory in Neuroscience
- No DOI given, and none found for title: Beyond normal: On the evaluation of mutual informa...
- No DOI given, and none found for title: Neural interactions in the human frontal cortex di...
- No DOI given, and none found for title: An information-theoretic approach to hypergraph ps...
- No DOI given, and none found for title: Estimation of Shannon differential entropy: An ext...
- No DOI given, and none found for title: Information decomposition and the informational ar...

❌ MISSING DOIs

- 10.1101/2020.09.22.308981 may be a valid DOI for title: A synergistic core for human brain evolution and c...
- 10.1103/physrevresearch.5.013025 may be a valid DOI for title: Gradients of O-information: Low-order descriptors ...
- 10.4135/9781412959384.n229 may be a valid DOI for title: A mathematical theory of communication
- 10.1016/j.nbd.2022.105918 may be a valid DOI for title: Genuine high-order interactions in brain networks ...
- 10.1101/2020.03.17.995886 may be a valid DOI for title: High-order interdependencies in the aging brain
- 10.21105/joss.01081 may be a valid DOI for title: IDTxl: The Information Dynamics Toolkit xl: a Pyth...
- 10.21105/joss.00738 may be a valid DOI for title: “dit“: a Python package for discrete information t...
- 10.21105/joss.01609 may be a valid DOI for title: infotheory: A C++/Python package for multivariate ...
- 10.1371/journal.pcbi.1006343 may be a valid DOI for title: PyPhi: A toolbox for integrated information theory
- 10.1103/physrevresearch.5.013025 may be a valid DOI for title: Gradients of O-information: Low-order descriptors ...
- 10.1103/physreve.91.052802 may be a valid DOI for title: Exploration of synergistic and redundant informati...

❌ INVALID DOIs

- None
EtienneCmb commented 20 hours ago

@editorialbot generate pdf

editorialbot commented 20 hours ago

:warning: An error happened when generating the pdf. Problem with affiliations for Christian Ferreyra, perhaps the affiliations index need quoting?.

EtienneCmb commented 20 hours ago

@editorialbot generate pdf

editorialbot commented 20 hours ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 20 hours ago

Five most similar historical JOSS papers:

IDTxl: The Information Dynamics Toolkit xl: a Python package for the efficient analysis of multivariate information dynamics in networks Submitting author: @pwollstadt Handling editor: @cMadan (Retired) Reviewers: @danielemarinazzo, @Autoplectic Similarity score: 0.7443

infotheory: A C++/Python package for multivariate information theoretic analysis Submitting author: @madvn Handling editor: @poulson (Retired) Reviewers: @ajgates42, @artemyk Similarity score: 0.7314

Spectral Connectivity: a python package for computing multitaper spectral estimates and frequency-domain brain connectivity measures on the CPU and GPU Submitting author: @edeno Handling editor: @emdupre (Active) Reviewers: @AJQuinn, @sappelhoff, @EtienneCmb Similarity score: 0.7099

XGI: A Python package for higher-order interaction networks Submitting author: @nwlandry Handling editor: @vissarion (Active) Reviewers: @arashbm, @MridulS Similarity score: 0.7045

Openseize: A digital signal processing package for large EEG datasets in Python Submitting author: @mscaudill Handling editor: @samhforbes (Active) Reviewers: @szorowi1, @AJQuinn Similarity score: 0.6959

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

EtienneCmb commented 20 hours ago

Suggested reviewers :

EtienneCmb commented 19 hours ago

@editorialbot generate pdf

editorialbot commented 19 hours ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 19 hours ago

Five most similar historical JOSS papers:

IDTxl: The Information Dynamics Toolkit xl: a Python package for the efficient analysis of multivariate information dynamics in networks Submitting author: @pwollstadt Handling editor: @cMadan (Retired) Reviewers: @danielemarinazzo, @Autoplectic Similarity score: 0.7430

infotheory: A C++/Python package for multivariate information theoretic analysis Submitting author: @madvn Handling editor: @poulson (Retired) Reviewers: @ajgates42, @artemyk Similarity score: 0.7351

XGI: A Python package for higher-order interaction networks Submitting author: @nwlandry Handling editor: @vissarion (Active) Reviewers: @arashbm, @MridulS Similarity score: 0.7075

Spectral Connectivity: a python package for computing multitaper spectral estimates and frequency-domain brain connectivity measures on the CPU and GPU Submitting author: @edeno Handling editor: @emdupre (Active) Reviewers: @AJQuinn, @sappelhoff, @EtienneCmb Similarity score: 0.7074

Openseize: A digital signal processing package for large EEG datasets in Python Submitting author: @mscaudill Handling editor: @samhforbes (Active) Reviewers: @szorowi1, @AJQuinn Similarity score: 0.7056

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.