[PRE REVIEW]: jax-smfsb: A python library for stochastic systems biology modelling and inference

[editorialbot]

Submitting author: !--author-handle-->@darrenjw<!--end-author-handle-- (Darren James Wilkinson) Repository: https://github.com/darrenjw/jax-smfsb Branch with paper.md (empty if default branch): Version: v1.0.0 Editor: !--editor-->@jromanowska<!--end-editor-- Reviewers: Pending Managing EiC: Chris Vernon

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.03 s (1617.4 files/s, 120350.1 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          40            556           1140           1614
TeX                              1             23              0            128
Markdown                         2             29              0             69
make                             3             26             11             37
TOML                             1              4              0             29
reStructuredText                 3             25             42             29
YAML                             1              6             17             10
-------------------------------------------------------------------------------
SUM:                            51            669           1210           1916
-------------------------------------------------------------------------------

Commit count by author:

    89  Darren Wilkinson

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 682

✅ The paper includes a Statement of need section

[editorialbot]

License info:

✅ License found: Apache License 2.0 (Valid open source OSI approved license)

[editorialbot]

:warning: An error happened when generating the pdf.

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1111/j.1467-9868.2009.00736.x is OK
- 10.1016/j.cpc.2022.108527 is OK
- 10.1093/bioinformatics/btn051 is OK
- 10.1098/rsfs.2011.0047 is OK
- 10.1007/s11222-011-9288-2 is OK
- 10.1038/s41586-020-2649-2 is OK
- 10.15252/msb.20199110 is OK
- 10.1088/1742-5468/ac3ae9 is OK
- 10.1038/s41592-019-0686-2 is OK
- 10.1098/rsif.2008.0172 is OK
- 10.1038/nrg2509 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: JAX: composable transformations of Python+NumPy pr...
- No DOI given, and none found for title: On Neural Differential Equations
- No DOI given, and none found for title: An overview of the Scala programming language
- No DOI given, and none found for title: Python 3 Reference Manual
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: scala-smfsb
- No DOI given, and none found for title: python-smfsb

❌ MISSING DOIs

- 10.1201/9781351000918 may be a valid DOI for title: Stochastic Modelling for Systems Biology, third ed...
- 10.32614/cran.package.smfsb may be a valid DOI for title: smfsb: Stochastic Modelling for Systems Biology

❌ INVALID DOIs

- None

[crvernon]

@editorialbot invite @jromanowska as editor

:wave: @jromanowska - are you available to take this one on?

[editorialbot]

Invitation to edit this submission sent!

[jromanowska]

@crvernon , I think I can take it :)

[jromanowska]

@editorialbot assign me as editor

[editorialbot]

Assigned! @jromanowska is now the editor