[PRE REVIEW]: pybeepop+: A Python wrapper for the BeePop+ honey bee colony model

[editorialbot]

Submitting author: !--author-handle-->@JeffreyMinucci<!--end-author-handle-- (Jeffrey Minucci) Repository: https://github.com/USEPA/pybeepop Branch with paper.md (empty if default branch): Version: v0.1.1 Editor: Pending Reviewers: Pending Managing EiC: Arfon Smith

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[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.90  T=0.02 s (1060.5 files/s, 114711.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                           5             74            129            404
CSV                              2              0              0            226
YAML                             6             29             25            220
Markdown                         2             73              0            177
TeX                              1             13              0            149
TOML                             1              6              0             62
Jupyter Notebook                 1              0            329             31
-------------------------------------------------------------------------------
SUM:                            18            195            483           1269
-------------------------------------------------------------------------------

Commit count by author:

   105  JeffreyMinucci
    52  Jeff Minucci

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.5281/zenodo.6856426 is OK
- 10.1002/ece3.1293 is OK
- 10.1016/j.tim.2011.09.003 is OK
- 10.5281/zenodo.3509134 is OK
- 10.1098/rspb.2020.0922 is OK
- 10.1126/science.aaa1190 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Dask: Library for dynamic task scheduling
- No DOI given, and none found for title: The population dynamics of varroa mites in honey b...
- No DOI given, and none found for title: Simulating the effects of pesticides on honey bee ...
- No DOI given, and none found for title: BEEPOP+

❌ MISSING DOIs

- 10.1126/science.1255957 may be a valid DOI for title: Bee declines driven by combined stress from parasi...
- 10.1093/bioinformatics/bty361 may be a valid DOI for title: pyABC: distributed, likelihood-free inference
- 10.1016/j.ecolmodel.2018.02.010 may be a valid DOI for title: Sensitivity analyses for simulating pesticide impa...
- 10.1002/eap.2442 may be a valid DOI for title: Inferring pesticide toxicity to honey bees from a ...
- 10.1111/gcb.17219 may be a valid DOI for title: Advances and knowledge gaps on climate change impa...

❌ INVALID DOIs

- None

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 720

✅ The paper includes a Statement of need section

[editorialbot]

License info:

✅ License found: MIT License (Valid open source OSI approved license)

[arfon]

@JeffreyMinucci – due to the relatively small size of this code and the fact it looks like an API/library wrapper, the editors will now discuss if it meets the substantial scholarly effort criterion for review by JOSS. We should get back to you sometime next week. If you want to fix the DOIs (noting that @editorialbot's suggestions are not always right), you can, then use the following commands (one at a time, as the first line of a new comment) to regenerate the PDF and check the references.

@editorialbot generate pdf @editorialbot check references

[arfon]

@editorialbot query scope

[editorialbot]

Submission flagged for editorial review.

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[editorialbot]

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