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[PRE REVIEW]: aweSOM: a CPU/GPU-accelerated Self-organizing Map and Statistically Combined Ensemble Framework for Machine-learning Clustering Analysis #7355

Open editorialbot opened 1 month ago

editorialbot commented 1 month ago

Submitting author: !--author-handle-->@tvh0021<!--end-author-handle-- (Trung Ha) Repository: https://github.com/tvh0021/aweSOM Branch with paper.md (empty if default branch): Version: 1.0.0 Editor: !--editor-->@gkthiruvathukal<!--end-editor-- Reviewers: Pending Managing EiC: Chris Vernon

Status

status

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HTML: <a href="https://joss.theoj.org/papers/b6995d7573124b56e82ec6b875f3b5d1"><img src="https://joss.theoj.org/papers/b6995d7573124b56e82ec6b875f3b5d1/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/b6995d7573124b56e82ec6b875f3b5d1/status.svg)](https://joss.theoj.org/papers/b6995d7573124b56e82ec6b875f3b5d1)

Author instructions

Thanks for submitting your paper to JOSS @tvh0021. Currently, there isn't a JOSS editor assigned to your paper.

@tvh0021 if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

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editorialbot commented 1 month ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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editorialbot commented 1 month ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.15 s (557.8 files/s, 140966.0 lines/s)
--------------------------------------------------------------------------------
Language                      files          blank        comment           code
--------------------------------------------------------------------------------
Python                           44           2242           1731           6084
HTML                             11            866             33           5095
JavaScript                        6            131            195            817
CSS                               2            190             32            778
Jupyter Notebook                  2              0           1646            456
Markdown                          3            124              0            335
TeX                               1             24              0            266
reStructuredText                  8            134            133            165
YAML                              2              6             17             29
DOS Batch                         1              8              1             26
Bourne Again Shell                5             14            112             22
make                              1              4              7              9
--------------------------------------------------------------------------------
SUM:                             86           3743           3907          14082
--------------------------------------------------------------------------------

Commit count by author:

    99  tvh0021
     7  Trung Ha
editorialbot commented 1 month ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1017/CBO9780511525087 is OK
- 10.1017/S0022377823000946 is OK
- 10.1088/0004-637X/771/2/124 is OK
- 10.3847/1538-4357/aad4ff is OK
- 10.1007/978-3-030-01057-7_60 is OK
- 10.23860/thesis-yuan-li-2018 is OK
- 10.1016/j.image.2021.116450 is OK
- 10.1109/5.58325 is OK
- 10.1145/2833157.2833162 is OK
- 10.5281/zenodo.13819579 is OK
- 10.3389/frai.2021.761925 is OK
- 10.21203/rs.3.rs-87487/v1 is OK
- 10.3390/s24092741 is OK
- 10.1023/A:1023941307670 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: The Local Structure of Turbulence in Incompressibl...
- No DOI given, and none found for title: Machine-Learning Characterization of Intermittency...
- No DOI given, and none found for title: JAX: composable transformations of Python+NumPy pr...
- No DOI given, and none found for title: MiniSom: minimalistic and NumPy-based implementati...
- No DOI given, and none found for title: Iris

❌ MISSING DOIs

- None

❌ INVALID DOIs

- https://doi.org/10.1016/j.asoc.2022.109972 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/j.envint.2008.01.006 is INVALID because of 'https://doi.org/' prefix
editorialbot commented 1 month ago

Paper file info:

📄 Wordcount for paper.md is 1585

✅ The paper includes a Statement of need section

editorialbot commented 1 month ago

License info:

✅ License found: MIT License (Valid open source OSI approved license)

editorialbot commented 1 month ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 1 month ago

Five most similar historical JOSS papers:

Scientific Computational Imaging Code (SCICO) Submitting author: @bwohlberg Handling editor: @danielskatz (Active) Reviewers: @vitorsr, @DanNixon, @lucaferranti Similarity score: 0.6644

mpi4jax: Zero-copy MPI communication of JAX arrays Submitting author: @dionhaefner Handling editor: @kellyrowland (Active) Reviewers: @1313e, @Himscipy Similarity score: 0.6633

cblearn: Comparison-based Machine Learning in Python Submitting author: @dekuenstle Handling editor: @mbarzegary (Active) Reviewers: @haniyeka, @sherbold, @stsievert Similarity score: 0.6548

Re-Envisioning Numerical Information Field Theory (NIFTy.re): A Library for Gaussian Processes and Variational Inference Submitting author: @Edenhofer Handling editor: @dfm (Active) Reviewers: @Abinashbunty, @apizzuto Similarity score: 0.6523

libEnsemble: A complete Python toolkit for dynamic ensembles of calculations Submitting author: @jmlarson1 Handling editor: @jbytecode (Active) Reviewers: @jsoishi, @SergeyYakubov Similarity score: 0.6521

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

crvernon commented 1 month ago

@editorialbot invite @gkthiruvathukal as editor

:wave: @gkthiruvathukal - are you able to take this one on as editor? Thanks!

gkthiruvathukal commented 1 month ago

@crvernon Ok, sure! I will take it. A little swamped in general lately but as long as slow progress is better than no progress, I can manage it!

crvernon commented 1 month ago

@editorialbot assign @gkthiruvathukal as editor

@gkthiruvathukal - slow progress is indeed better than no progress in this case, so thank you!!

editorialbot commented 1 month ago

Assigned! @gkthiruvathukal is now the editor

crvernon commented 1 month ago

@editorialbot assign @gkthiruvathukal as editor

Doing this again because we had some system upgrades that were applied.

editorialbot commented 1 month ago

Assigned! @gkthiruvathukal is now the editor

gkthiruvathukal commented 2 hours ago

@haniyeka, @sherbold, @stsievert: Please let me know if you are willing to contribute a review for this JOSS submission. I need at least 2 reviewers to proceed.

stsievert commented 2 hours ago

@gkthiruvathukal sorry, I can't review. I don't have the bandwidth now.

I have taken a brief glance. I'd encourage the authors (@tvh0021, ...) to review the JOSS review guidelines. In particular, I think the main page should feature a clear statement of need and the answer to the question "what's the purpose of this project?" An FAQ page is not where I'd expect to find that answer.