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Reviews for the Journal of Open Source Software
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[REVIEW]: High-performance estimation of Higher-Order Interactions from multivariate data #7360

Open editorialbot opened 2 days ago

editorialbot commented 2 days ago

Submitting author: !--author-handle-->@EtienneCmb<!--end-author-handle-- (Etienne Combrisson) Repository: https://github.com/brainets/hoi Branch with paper.md (empty if default branch): paper Version: v0.0.1 Editor: !--editor-->@jbytecode<!--end-editor-- Reviewers: @pitmonticone, @ClaudMor Archive: Pending

Status

status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/cdae325c0d48fdcb8c09802b7744554f"><img src="https://joss.theoj.org/papers/cdae325c0d48fdcb8c09802b7744554f/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/cdae325c0d48fdcb8c09802b7744554f/status.svg)](https://joss.theoj.org/papers/cdae325c0d48fdcb8c09802b7744554f)

Reviewers and authors:

Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)

Reviewer instructions & questions

@pitmonticone & @ClaudMor, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review. First of all you need to run this command in a separate comment to create the checklist:

@editorialbot generate my checklist

The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @jbytecode know.

Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest

Checklists

📝 Checklist for @pitmonticone

editorialbot commented 2 days ago

Hello humans, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf
editorialbot commented 2 days ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.05 s (1510.4 files/s, 157635.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          45           1100           1853           2572
SVG                              1              0              0            729
TeX                              2             50              0            502
reStructuredText                14            187            144            207
YAML                             5             28             11            123
Markdown                         2             18              0             72
HTML                             2              6              1             48
DOS Batch                        1              8              1             26
TOML                             1              1              0             16
make                             1              4              7              9
-------------------------------------------------------------------------------
SUM:                            74           1402           2017           4304
-------------------------------------------------------------------------------

Commit count by author:

   144  EtienneCmb
    66  Dishie2498
    10  Pierre Robiglio
     9  Mattehub
     7  Onur Ates
     7  dependabot[bot]
     3  Matteo NERI
     2  Andrea Brovelli
     1  Christian Ferreyra
     1  Etienne Combrisson
editorialbot commented 2 days ago

Paper file info:

📄 Wordcount for paper.md is 781

✅ The paper includes a Statement of need section

editorialbot commented 2 days ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1103/PhysRevE.100.032305 is OK
- 10.1038/s41593-022-01070-0 is OK
- 10.3390/e21090869 is OK
- 10.1103/PhysRevResearch.5.013025 is OK
- 10.1038/s41567-021-01371-4 is OK
- 10.1523/ENEURO.0052-18.2018 is OK
- 10.1016/j.nbd.2022.105918 is OK
- 10.1089/brain.2020.0982 is OK
- 10.7554/eLife.92938 is OK
- 10.21105/joss.01081 is OK
- 10.21105/joss.00738 is OK
- 10.21105/joss.01609 is OK
- 10.1371/journal.pcbi.1006343 is OK
- 10.1016/j.tics.2023.11.005 is OK
- 10.1103/PhysRevResearch.5.013025 is OK
- 10.1103/PhysRevE.91.052802 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Towards an extended taxonomy of information dynami...
- No DOI given, and none found for title: Nonnegative decomposition of multivariate informat...
- No DOI given, and none found for title: Beyond normal: On the evaluation of mutual informa...
- No DOI given, and none found for title: An information-theoretic approach to hypergraph ps...
- No DOI given, and none found for title: Estimation of Shannon differential entropy: An ext...

❌ MISSING DOIs

- 10.4135/9781412959384.n229 may be a valid DOI for title: A mathematical theory of communication

❌ INVALID DOIs

- None
editorialbot commented 2 days ago

License info:

✅ License found: BSD 3-Clause "New" or "Revised" License (Valid open source OSI approved license)

editorialbot commented 2 days ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

jbytecode commented 2 days ago

Dear @pitmonticone, @ClaudMor

You can start by creating your task lists. Each list will contain several tasks.

As you complete each task, you can check off the corresponding checkbox. Since the review process for JOSS is interactive, you are encouraged to engage with the author, other reviewers, and the editor throughout. You can open issues and submit pull requests in the target repository. Please include the URL of this page in those interactions, so we can keep track of activities outside of the platform.

To generate your task list, simply type:

@editorialbot generate my checklist

Thank you in advance.

pitmonticone commented 2 days ago

Review checklist for @pitmonticone

Conflict of interest

Code of Conduct

General checks

Functionality

Documentation

Software paper

pitmonticone commented 2 days ago

@editorialbot commands

editorialbot commented 2 days ago

Hello @pitmonticone, here are the things you can ask me to do:


# List all available commands
@editorialbot commands

# Get a list of all editors's GitHub handles
@editorialbot list editors

# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist

# Set a value for branch
@editorialbot set joss-paper as branch

# Run checks and provide information on the repository and the paper file
@editorialbot check repository

# Check the references of the paper for missing DOIs
@editorialbot check references

# Generates the pdf paper
@editorialbot generate pdf

# Generates a LaTeX preprint file
@editorialbot generate preprint

# Get a link to the complete list of reviewers
@editorialbot list reviewers